Strain Fitness in Pseudomonas putida KT2440 around PP_5512

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
2,599,351	+		PP_2277	0.50	-0.6
2,599,517	+		PP_2277	0.62	-2.4
2,599,636	+		PP_2277	0.70	+0.7
2,599,863	-		PP_2277	0.87	-1.7
2,599,882	+		PP_2277	0.88	+2.0
2,599,931	+				-0.2
2,599,932	-				+0.1
2,600,088	-				+0.1
2,600,182	-		PP_2278	0.41	-0.8
2,600,276	-		PP_2278	0.89	-1.1
2,600,294	+				-0.1
2,600,295	-				+0.2
2,600,295	-				+0.3
2,600,295	-				+0.1
2,600,295	-				+0.1
2,600,319	+				+0.3
2,600,319	+		PP_5512	0.11	+0.3
2,600,320	-		PP_5512	0.11	+0.4
2,600,331	-		PP_5512	0.16	+0.1
2,600,407	+		PP_5512	0.51	+0.4
2,600,407	+		PP_5512	0.51	-0.2
2,600,407	+		PP_5512	0.51	+1.0
2,600,407	+		PP_5512	0.51	+0.6
2,600,408	-		PP_5512	0.51	+1.1
2,600,408	-		PP_5512	0.51	-1.1
2,600,484	+		PP_5512	0.86	+0.6
2,600,484	+		PP_5512	0.86	-0.6
2,600,484	+		PP_5512	0.86	+1.4
2,600,484	+		PP_5512	0.86	+0.5
2,600,485	-		PP_5512	0.86	+0.3
2,600,485	-		PP_5512	0.86	+0.9
2,600,511	-				-0.2
2,600,512	+				-0.3
2,600,513	-				-0.7
2,600,572	+				-1.4
2,600,607	-				-0.4
2,600,632	+				+0.4
2,600,632	+				+1.2
2,600,633	-				-1.5
2,600,686	+		PP_2279	0.10	-0.4
2,600,686	+		PP_2279	0.10	-0.4
2,600,962	+		PP_2279	0.28	+0.9
2,600,963	-		PP_2279	0.28	-0.1
2,600,963	-		PP_2279	0.28	+0.5
2,600,963	-		PP_2279	0.28	+0.1
2,600,963	-		PP_2279	0.28	-0.6
2,600,992	+		PP_2279	0.30	+0.1
2,601,007	+		PP_2279	0.31	-1.3
2,601,008	-		PP_2279	0.31	+0.7
2,601,008	-		PP_2279	0.31	+0.3
2,601,102	-		PP_2279	0.37	-0.1
2,601,144	+		PP_2279	0.39	-0.5
2,601,144	+		PP_2279	0.39	-0.1
2,601,144	+		PP_2279	0.39	-0.0
2,601,145	-		PP_2279	0.39	+0.4
2,601,202	+		PP_2279	0.43	-0.0
2,601,202	+				+1.4
2,601,202	+		PP_2279	0.43	-0.1
2,601,202	+		PP_2279	0.43	+0.2
2,601,308	-		PP_2279	0.50	-1.6
2,601,308	-		PP_2279	0.50	-0.3
2,601,319	+		PP_2279	0.50	-0.3
2,601,331	+		PP_2279	0.51	-1.0
2,601,332	-		PP_2279	0.51	-0.4
2,601,332	-		PP_2279	0.51	-0.6
2,601,435	+		PP_2279	0.58	-0.2