Experiment: D-Glucose (C) pH 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0276 and PP_t73 are separated by 287 nucleotides PP_t73 and PP_0277 are separated by 98 nucleotides PP_0277 and PP_5437 are separated by 203 nucleotides PP_5437 and PP_0278 are separated by 134 nucleotides PP_0278 and PP_0279 are separated by 392 nucleotides
PP_0276: PP_0276 - Transcriptional regulator, Cro/CI family, at 334,362 to 334,685
_0276
PP_t73: PP_t73 - tRNA-Thr, at 334,973 to 335,048
_t73
PP_0277: PP_0277 - conserved exported protein of unknown function, at 335,147 to 335,395
_0277
PP_5437: PP_5437 - protein of unknown function, at 335,599 to 335,781
_5437
PP_0278: PP_0278 - conserved protein of unknown function, at 335,916 to 336,152
_0278
PP_0279: PP_0279 - conserved protein of unknown function, at 336,545 to 337,750
_0279
Position (kb) 335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 334.866 kb on + strand at 334.897 kb on + strand at 334.965 kb on - strand at 334.971 kb on + strand at 334.972 kb on - strand at 334.972 kb on - strand at 335.065 kb on - strand at 335.119 kb on - strand at 335.505 kb on + strand at 335.505 kb on + strand at 335.506 kb on - strand at 335.506 kb on - strand at 335.506 kb on - strand at 335.506 kb on - strand at 335.506 kb on - strand at 335.548 kb on - strand at 335.548 kb on - strand at 335.548 kb on - strand at 335.577 kb on - strand at 335.600 kb on + strand at 335.601 kb on - strand at 335.608 kb on + strand at 335.663 kb on + strand, within PP_5437 at 335.664 kb on - strand, within PP_5437 at 335.668 kb on + strand, within PP_5437 at 335.668 kb on + strand, within PP_5437 at 335.668 kb on + strand, within PP_5437 at 335.669 kb on - strand, within PP_5437 at 335.669 kb on - strand, within PP_5437 at 335.686 kb on - strand, within PP_5437 at 335.686 kb on - strand, within PP_5437 at 335.765 kb on + strand at 335.765 kb on + strand at 335.765 kb on + strand at 335.765 kb on + strand at 335.765 kb on + strand at 335.766 kb on - strand at 335.766 kb on - strand at 335.790 kb on + strand at 335.790 kb on + strand at 335.790 kb on + strand at 335.791 kb on - strand at 335.825 kb on - strand at 335.850 kb on - strand at 335.998 kb on + strand, within PP_0278 at 336.004 kb on + strand, within PP_0278 at 336.005 kb on - strand, within PP_0278 at 336.005 kb on - strand, within PP_0278 at 336.033 kb on + strand, within PP_0278 at 336.105 kb on - strand, within PP_0278 at 336.125 kb on + strand, within PP_0278 at 336.178 kb on + strand at 336.188 kb on + strand at 336.188 kb on + strand at 336.188 kb on + strand at 336.403 kb on + strand at 336.500 kb on + strand at 336.501 kb on - strand at 336.524 kb on + strand at 336.624 kb on + strand at 336.624 kb on + strand at 336.625 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) pH 7 remove 334,866 + +0.6 334,897 + +0.8 334,965 - +1.0 334,971 + +0.1 334,972 - -0.3 334,972 - -0.4 335,065 - -1.5 335,119 - -1.8 335,505 + -0.2 335,505 + +0.4 335,506 - -0.3 335,506 - +0.2 335,506 - +0.3 335,506 - -0.7 335,506 - -0.4 335,548 - -0.2 335,548 - -1.0 335,548 - +0.7 335,577 - -0.1 335,600 + +0.1 335,601 - +0.1 335,608 + +0.1 335,663 + PP_5437 0.35 +0.2 335,664 - PP_5437 0.36 -2.9 335,668 + PP_5437 0.38 -0.6 335,668 + PP_5437 0.38 -1.2 335,668 + PP_5437 0.38 +0.7 335,669 - PP_5437 0.38 -2.0 335,669 - PP_5437 0.38 -2.0 335,686 - PP_5437 0.48 -0.1 335,686 - PP_5437 0.48 -0.9 335,765 + +1.5 335,765 + +0.2 335,765 + +0.6 335,765 + +0.3 335,765 + +0.1 335,766 - -0.1 335,766 - -0.0 335,790 + -0.8 335,790 + +0.1 335,790 + +0.0 335,791 - +0.4 335,825 - -0.6 335,850 - +0.7 335,998 + PP_0278 0.35 +0.2 336,004 + PP_0278 0.37 -0.1 336,005 - PP_0278 0.38 -0.2 336,005 - PP_0278 0.38 +0.8 336,033 + PP_0278 0.49 -0.6 336,105 - PP_0278 0.80 -2.1 336,125 + PP_0278 0.88 +0.0 336,178 + -0.8 336,188 + -0.2 336,188 + +0.1 336,188 + -0.4 336,403 + +0.5 336,500 + +0.0 336,501 - -0.2 336,524 + -1.7 336,624 + -1.2 336,624 + +0.7 336,625 - -0.3
Or see this region's nucleotide sequence