Strain Fitness in Pseudomonas putida KT2440 around PP_5208

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
5,939,228	+		PP_5207	0.66	-0.1
5,939,255	+		PP_5207	0.67	+0.2
5,939,256	-		PP_5207	0.67	+0.1
5,939,366	+		PP_5207	0.71	+0.8
5,939,442	-		PP_5207	0.74	+0.6
5,939,442	-		PP_5207	0.74	+0.5
5,939,598	+		PP_5207	0.79	+0.1
5,939,676	-		PP_5207	0.82	+0.8
5,939,676	-		PP_5207	0.82	-0.2
5,939,726	+		PP_5207	0.84	+1.2
5,939,727	-		PP_5207	0.84	-0.0
5,939,808	+		PP_5207	0.87	-0.9
5,939,808	+		PP_5207	0.87	+0.1
5,939,808	+		PP_5207	0.87	+0.6
5,939,809	-		PP_5207	0.87	+0.0
5,939,837	+		PP_5207	0.88	+0.9
5,939,837	+		PP_5207	0.88	+0.8
5,939,838	-		PP_5207	0.88	-0.0
5,939,924	-				+0.2
5,939,924	-				+0.8
5,940,020	+				+0.1
5,940,061	-				+0.1
5,940,247	+				+1.4
5,940,247	+				+0.2
5,940,247	+				+0.2
5,940,247	+				+0.1
5,940,247	+				+1.2
5,940,248	-				+0.1
5,940,248	-				+0.1
5,940,248	-				-0.1
5,940,248	-				-1.2
5,940,249	+				+1.8
5,940,249	+				-0.1
5,940,249	+				+0.8
5,940,249	+				+0.5
5,940,249	+				+0.5
5,940,249	+				-0.1
5,940,249	+				+0.8
5,940,249	+				+1.2
5,940,249	+				-0.1
5,940,249	+				+0.1
5,940,249	+				-0.1
5,940,249	+				+1.1
5,940,250	-				+0.2
5,940,250	-				+1.1
5,940,250	-				-0.8
5,940,250	-				+1.0
5,940,270	+				-0.4
5,940,270	+				+0.3
5,940,270	+				-0.0
5,940,271	-				-1.3
5,940,271	-				+0.4
5,940,271	-				-0.2
5,940,271	-				-0.1
5,940,339	-		PP_5208	0.16	+1.1
5,940,339	-		PP_5208	0.16	-0.9
5,940,339	-		PP_5208	0.16	+0.7
5,940,339	-		PP_5208	0.16	+0.4
5,940,530	+		PP_5208	0.33	-0.2
5,940,531	-		PP_5208	0.33	+0.8
5,940,601	-		PP_5208	0.39	+0.0
5,940,713	+		PP_5208	0.50	-0.3
5,940,713	+		PP_5208	0.50	-0.2
5,940,713	+		PP_5208	0.50	-0.8
5,940,714	-		PP_5208	0.50	+0.2
5,940,714	-		PP_5208	0.50	+0.3
5,940,714	-		PP_5208	0.50	+0.4
5,940,881	-		PP_5208	0.65	-0.1
5,940,881	-		PP_5208	0.65	+0.9
5,940,951	+		PP_5208	0.71	-0.9
5,940,951	+		PP_5208	0.71	-1.0
5,940,952	-		PP_5208	0.71	+0.4
5,940,952	-		PP_5208	0.71	+1.6
5,940,965	+		PP_5208	0.72	+1.4
5,940,966	-		PP_5208	0.72	-0.8
5,940,966	-		PP_5208	0.72	+1.1
5,941,085	+		PP_5208	0.83	+1.8
5,941,186	+				-0.9
5,941,187	-				-1.0
5,941,187	-				-0.3
5,941,374	+				-1.9
5,941,374	+				-0.7
5,941,374	+				-0.7
5,941,374	+				+0.8
5,941,375	-				-0.6
5,941,375	-				-0.1
5,941,375	-				-0.5
5,941,376	+				+2.1
5,941,376	+				-0.8
5,941,377	-				+0.6
5,941,377	-				+0.3
5,941,377	-				+1.4
5,941,392	+				+1.1
5,941,425	+				-0.3
5,941,425	+				+0.3
5,941,426	-				+0.7
5,941,426	-				+0.2
5,941,426	-				+1.2
5,941,426	-				-0.5
5,941,426	-				+1.0
5,941,426	-				+0.7
5,941,426	-				-0.3
5,941,453	+				-0.7
5,941,470	-				-0.7
5,941,565	+		PP_5722	0.25	+0.6
5,941,565	+		PP_5722	0.25	-1.3
5,941,566	-		PP_5722	0.26	-0.2
5,941,566	-		PP_5722	0.26	+0.2
5,941,576	+		PP_5722	0.28	-0.6
5,941,576	+		PP_5722	0.28	-0.5
5,941,576	+		PP_5722	0.28	+0.0
5,941,577	-		PP_5722	0.28	+1.0
5,941,577	-		PP_5722	0.28	-0.3
5,941,631	+		PP_5722	0.40	-0.6
5,941,632	-		PP_5722	0.41	+2.4
5,941,642	+		PP_5722	0.43	+0.8
5,941,643	-		PP_5722	0.43	-1.6
5,941,690	+		PP_5722	0.54	+1.1
5,941,690	+		PP_5722	0.54	+0.8
5,941,690	+		PP_5722	0.54	+0.0
5,941,691	-		PP_5722	0.54	-1.2
5,941,691	-		PP_5722	0.54	-0.3
5,941,739	+		PP_5722	0.65	-0.9
5,941,752	+		PP_5722	0.68	-0.5
5,941,761	+		PP_5722	0.70	+0.8
5,941,761	+		PP_5722	0.70	+0.4
5,941,761	+		PP_5722	0.70	+0.4
5,941,762	-		PP_5722	0.71	+0.2
5,941,855	-				-0.4
5,941,855	-				+0.5
5,941,855	-				-1.7
5,941,928	+				+0.4
5,941,928	+				+0.2
5,941,928	+				-0.6
5,941,929	-				+0.3
5,941,929	-				-0.1
5,941,929	-				+0.1
5,941,929	-				-0.3
5,941,969	-				+0.2
5,941,990	+				-0.1
5,941,990	+				-0.3
5,941,990	+				-0.4
5,941,990	+				+0.1
5,941,991	-				+0.0
5,941,991	-				+0.1
5,941,991	-				+0.1
5,942,002	-				+0.4
5,942,024	-				+0.0
5,942,024	-				-1.5
5,942,024	-				+0.0
5,942,249	-		PP_5209	0.42	-0.7
5,942,249	-		PP_5209	0.42	-1.6
5,942,249	-		PP_5209	0.42	-2.2
5,942,249	-		PP_5209	0.42	-1.0