Strain Fitness in Pseudomonas putida KT2440 around PP_4994

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
5,690,692	+		PP_4993	0.12	+0.7
5,690,692	+		PP_4993	0.12	-0.3
5,690,692	+		PP_4993	0.12	-0.1
5,690,692	+		PP_4993	0.12	+0.3
5,690,693	-		PP_4993	0.12	-1.0
5,690,693	-		PP_4993	0.12	-0.8
5,690,713	+		PP_4993	0.14	+1.3
5,690,713	+		PP_4993	0.14	-0.5
5,690,714	-		PP_4993	0.14	+0.7
5,690,714	-		PP_4993	0.14	+2.3
5,690,881	+		PP_4993	0.31	+2.3
5,690,881	+		PP_4993	0.31	-0.4
5,690,882	-		PP_4993	0.32	+2.3
5,690,882	-		PP_4993	0.32	-0.5
5,690,913	-		PP_4993	0.35	+0.7
5,690,922	-		PP_4993	0.36	-0.8
5,691,181	+		PP_4993	0.63	-0.8
5,691,245	-		PP_4993	0.70	+2.3
5,691,245	-		PP_4993	0.70	+1.2
5,691,415	+		PP_4993	0.87	-0.1
5,691,416	-		PP_4993	0.88	-0.8
5,691,473	-				+0.0
5,691,473	-				-0.7
5,691,473	-				-0.3
5,691,521	+				-0.9
5,691,521	+				-0.5
5,691,522	-				+1.1
5,691,550	-				+1.2
5,691,550	-				-0.6
5,691,550	-				-0.1
5,691,557	+				-1.3
5,691,568	-				-0.2
5,691,568	-				+0.4
5,691,581	+				-1.2
5,691,581	+				+0.4
5,691,620	+				+0.6
5,691,621	-				+2.1
5,691,621	-				-1.0
5,692,163	+		PP_4994	0.59	+0.7
5,692,163	+		PP_4994	0.59	+0.9
5,692,163	+		PP_4994	0.59	+1.1
5,692,163	+		PP_4994	0.59	+0.4
5,692,164	-		PP_4994	0.59	+0.5
5,692,164	-		PP_4994	0.59	+0.4
5,692,229	+		PP_4994	0.67	+0.5
5,692,307	+		PP_4994	0.75	+0.2
5,692,355	+		PP_4994	0.80	-0.5
5,692,356	-		PP_4994	0.81	+0.4
5,692,369	-		PP_4994	0.82	+0.6
5,692,458	+				-0.8
5,692,459	-				+1.0
5,692,525	+				-2.8
5,692,722	+				-0.2
5,692,791	+		PP_4995	0.16	-0.7
5,692,791	+		PP_4995	0.16	-0.2
5,692,791	+		PP_4995	0.16	+0.0
5,692,791	+		PP_4995	0.16	+0.4
5,692,791	+		PP_4995	0.16	+2.3
5,693,038	+		PP_4995	0.59	+0.8
5,693,038	+				+1.3
5,693,038	+		PP_4995	0.59	-2.2
5,693,038	+		PP_4995	0.59	-0.1
5,693,038	+		PP_4995	0.59	+0.1
5,693,038	+		PP_4995	0.59	+0.2
5,693,038	+		PP_4995	0.59	+0.6
5,693,038	+		PP_4995	0.59	+0.5
5,693,038	+		PP_4995	0.59	+3.9
5,693,039	+		PP_4995	0.59	+0.1
5,693,280	+				+0.2
5,693,280	+				+0.4