Strain Fitness in Pseudomonas putida KT2440 around PP_4099

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
4,635,138	-				+1.6
4,635,138	-				+0.7
4,635,212	-		PP_4099	0.15	+0.6
4,635,212	-		PP_4099	0.15	+1.4
4,635,215	+		PP_4099	0.15	+1.1
4,635,216	-		PP_4099	0.15	+1.6
4,635,216	-		PP_4099	0.15	+1.5
4,635,216	-		PP_4099	0.15	+1.4
4,635,216	-		PP_4099	0.15	+1.4
4,635,216	-		PP_4099	0.15	+1.5
4,635,383	+		PP_4099	0.42	+1.4
4,635,383	+		PP_4099	0.42	+1.1
4,635,383	+		PP_4099	0.42	+1.6
4,635,383	+		PP_4099	0.42	+1.8
4,635,383	+		PP_4099	0.42	+1.2
4,635,384	-		PP_4099	0.42	+1.4
4,635,384	-		PP_4099	0.42	+1.2
4,635,384	-		PP_4099	0.42	+1.4
4,635,385	+		PP_4099	0.42	+1.4
4,635,385	+		PP_4099	0.42	+1.3
4,635,385	+		PP_4099	0.42	+1.4
4,635,385	+		PP_4099	0.42	+0.9
4,635,386	-		PP_4099	0.42	+1.4
4,635,386	-		PP_4099	0.42	+1.4
4,635,386	-		PP_4099	0.42	+1.4
4,635,386	-		PP_4099	0.42	+1.7
4,635,386	-		PP_4099	0.42	+1.5
4,635,386	-		PP_4099	0.42	+1.5
4,635,454	+		PP_4099	0.53	+1.3
4,635,522	+		PP_4099	0.63	+1.4
4,635,522	+		PP_4099	0.63	+0.6
4,635,523	-		PP_4099	0.64	+1.5
4,635,523	-		PP_4099	0.64	+1.5
4,635,704	+				+1.3
4,635,704	+				+1.7
4,635,704	+				+1.3
4,635,705	-				+1.4
4,635,705	-				+1.4
4,635,705	-				+1.6
4,635,705	-				+0.5
4,635,705	-				+1.5
4,635,705	-				+1.2
4,635,708	-				+1.5
4,635,708	-				+1.5
4,635,708	-				+1.4
4,635,708	-				+1.6
4,635,741	+				+1.5
4,635,741	+				+1.6
4,635,742	-				+1.4
4,635,750	-				+1.5
4,635,860	+		PP_4100	0.11	+0.5
4,635,860	+		PP_4100	0.11	+0.5
4,636,030	+		PP_4100	0.54	+0.5
4,636,030	+		PP_4100	0.54	-0.6
4,636,030	+		PP_4100	0.54	+0.6
4,636,030	+		PP_4100	0.54	-0.4
4,636,030	+		PP_4100	0.54	+0.2
4,636,030	+		PP_4100	0.54	+0.5
4,636,031	-		PP_4100	0.54	-0.5
4,636,031	-		PP_4100	0.54	+0.6
4,636,031	-		PP_4100	0.54	-1.9
4,636,031	-		PP_4100	0.54	-1.7
4,636,070	-		PP_4100	0.64	+0.5
4,636,070	-		PP_4100	0.64	-0.2
4,636,074	+		PP_4100	0.65	+0.0
4,636,075	-		PP_4100	0.66	+0.1
4,636,102	+		PP_4100	0.73	-0.3
4,636,103	-		PP_4100	0.73	+0.2
4,636,147	-		PP_4100	0.84	-0.0
4,636,160	+		PP_4100	0.87	+0.4
4,636,209	-				+1.9
4,636,229	+				+0.1
4,636,229	+				+1.2
4,636,241	+				+0.7
4,636,241	+				+0.6
4,636,242	-				+0.8
4,636,268	+				+0.5
4,636,268	+				+0.9
4,636,269	-				+0.4
4,636,269	-				-0.3
4,636,285	+				+0.2
4,636,285	+				-2.0
4,636,286	-				-0.2
4,636,321	+				-0.5
4,636,322	-				-1.2
4,636,322	-				-1.7
4,636,322	-				-0.8
4,636,328	+				-0.2
4,636,328	+				-0.6
4,636,329	-				+1.9
4,636,329	-				-0.1
4,636,329	-				+0.3
4,636,329	-				+0.0
4,636,336	+				+0.7
4,636,336	+				-1.0
4,636,337	-				+0.3
4,636,352	+				+0.2
4,636,353	-				-0.6
4,636,398	+		PP_4101	0.18	+0.4
4,636,601	+		PP_4101	0.64	-1.3
4,636,601	+		PP_4101	0.64	-0.6
4,636,602	-		PP_4101	0.64	-0.8
4,636,602	-		PP_4101	0.64	-1.2
4,636,602	-		PP_4101	0.64	+0.4
4,636,602	-		PP_4101	0.64	+0.8
4,636,602	-		PP_4101	0.64	+0.9
4,636,678	-		PP_4101	0.82	-0.4
4,636,678	-		PP_4101	0.82	-0.1
4,636,702	+		PP_4101	0.87	-0.3
4,636,751	+				+0.2
4,636,751	+				+1.0
4,636,751	+				-0.2
4,636,752	-				-0.8
4,636,752	-				-2.2
4,636,752	-				+0.3