Strain Fitness in Pseudomonas putida KT2440 around PP_3831

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
4,355,697	-		PP_3830	0.20	-1.2
4,355,697	-		PP_3830	0.20	+0.3
4,355,697	-		PP_3830	0.20	+0.3
4,355,730	-		PP_3830	0.23	-0.4
4,355,730	-		PP_3830	0.23	-1.2
4,356,003	+		PP_3830	0.48	+1.8
4,356,051	+		PP_3830	0.52	-0.2
4,356,051	+		PP_3830	0.52	-1.5
4,356,051	+		PP_3830	0.52	+1.3
4,356,051	+		PP_3830	0.52	+0.5
4,356,051	+		PP_3830	0.52	-0.1
4,356,051	+		PP_3830	0.52	-0.3
4,356,051	+		PP_3830	0.52	-0.1
4,356,051	+		PP_3830	0.52	+0.2
4,356,052	-		PP_3830	0.52	+0.7
4,356,052	-		PP_3830	0.52	-0.3
4,356,052	-		PP_3830	0.52	-2.4
4,356,052	-		PP_3830	0.52	-0.8
4,356,052	-		PP_3830	0.52	+1.0
4,356,052	-		PP_3830	0.52	+0.1
4,356,052	-		PP_3830	0.52	+0.2
4,356,052	-		PP_3830	0.52	+0.2
4,356,052	-		PP_3830	0.52	-0.4
4,356,052	-		PP_3830	0.52	-0.8
4,356,053	+		PP_3830	0.52	-0.5
4,356,053	+		PP_3830	0.52	-0.6
4,356,053	+		PP_3830	0.52	-0.4
4,356,053	+		PP_3830	0.52	-0.9
4,356,053	+		PP_3830	0.52	+0.4
4,356,053	+		PP_3830	0.52	+0.8
4,356,053	+		PP_3830	0.52	+0.3
4,356,053	+		PP_3830	0.52	+1.3
4,356,053	+		PP_3830	0.52	+0.3
4,356,053	+		PP_3830	0.52	-1.1
4,356,053	+		PP_3830	0.52	-0.2
4,356,054	-		PP_3830	0.52	-0.0
4,356,054	-		PP_3830	0.52	-0.5
4,356,054	-		PP_3830	0.52	+0.4
4,356,054	-		PP_3830	0.52	+0.0
4,356,054	-		PP_3830	0.52	-0.6
4,356,211	+		PP_3830	0.67	-1.8
4,356,211	+		PP_3830	0.67	+0.1
4,356,236	+		PP_3830	0.69	+0.2
4,356,535	-				-0.4
4,356,591	+				+1.1
4,356,591	+				+0.4
4,356,591	+				+0.4
4,356,665	+				+0.2
4,356,665	+				+0.5
4,356,665	+				+0.4
4,356,666	-				-0.1
4,356,666	-				+1.0
4,356,722	+				-0.7
4,356,722	+				-0.8
4,356,723	-				+0.4
4,356,723	-				+0.1
4,356,723	-				-0.2
4,356,923	+		PP_3831	0.28	+0.7
4,357,076	+		PP_3831	0.43	-1.2
4,357,097	+		PP_3831	0.45	-0.5
4,357,098	-		PP_3831	0.46	-0.4
4,357,265	+		PP_3831	0.62	-0.0
4,357,292	-		PP_3831	0.65	+0.2
4,357,349	-		PP_3831	0.70	-2.5
4,357,361	+		PP_3831	0.71	+1.3
4,357,361	+		PP_3831	0.71	+1.1
4,357,362	-		PP_3831	0.71	-0.5
4,357,401	+		PP_3831	0.75	+2.0
4,357,402	-		PP_3831	0.75	-0.5
4,357,455	+				-1.2
4,357,487	-		PP_3831	0.84	+1.0
4,357,511	+		PP_3831	0.86	+1.6
4,357,511	+		PP_3831	0.86	+1.4
4,357,511	+		PP_3831	0.86	-0.2
4,357,512	-		PP_3831	0.86	-2.5
4,357,512	-		PP_3831	0.86	+0.1
4,357,538	+		PP_3831	0.89	+1.6
4,357,538	+		PP_3831	0.89	+1.0
4,357,538	+		PP_3831	0.89	+2.0
4,357,538	+		PP_3831	0.89	+1.4
4,357,539	-		PP_3831	0.89	+0.6
4,357,539	-		PP_3831	0.89	+0.2
4,357,710	+				+0.9
4,357,807	+				+1.6
4,357,807	+				+1.8
4,357,807	+				+1.6
4,357,808	-				-2.0
4,357,810	+				+1.3
4,357,871	+				+0.3
4,357,885	+				-0.3
4,357,885	+				+0.0
4,357,885	+				-0.7
4,357,885	+				+0.4
4,357,886	-				-0.2
4,357,886	-				-0.4
4,357,886	-				-0.1
4,357,886	-				-0.8
4,357,887	+				+0.9
4,357,887	+				-0.1
4,357,887	+				-1.7
4,357,887	+				+0.4
4,357,887	+				+0.6
4,357,887	+				-0.2
4,357,888	-				-0.2
4,357,888	-				-0.2
4,357,888	-				+1.8
4,357,888	-				+0.1
4,357,905	+				-0.1
4,357,905	+				-0.5
4,357,905	+				+0.8
4,357,906	-				-0.6
4,357,906	-				-0.8
4,357,906	-				+0.2
4,357,906	-				-0.4
4,357,906	-				+0.5
4,357,925	+				+0.3
4,358,154	+				-0.8
4,358,154	+				-0.4
4,358,154	+				+1.8
4,358,154	+				-1.0
4,358,157	+				+0.0
4,358,158	-				+0.2
4,358,208	+		PP_3833	0.18	+1.8
4,358,209	-		PP_3833	0.18	-0.5
4,358,209	-		PP_3833	0.18	-0.5
4,358,341	+		PP_3833	0.55	-0.3
4,358,341	+		PP_3833	0.55	+0.9
4,358,341	+		PP_3833	0.55	+0.4
4,358,342	-		PP_3833	0.56	-0.1
4,358,342	-		PP_3833	0.56	-0.8
4,358,467	+				+0.3
4,358,467	+				+0.6
4,358,468	-				-0.5
4,358,581	+				-0.2
4,358,581	+				-1.0
4,358,581	+				+0.3
4,358,582	-				-0.0