Strain Fitness in Pseudomonas putida KT2440 around PP_3803

Experiment: D-Glucose (C) pH 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3801 and PP_3802 overlap by 4 nucleotidesPP_3802 and PP_3803 overlap by 1 nucleotidesPP_3803 and PP_3804 overlap by 4 nucleotidesPP_3804 and PP_3805 are separated by 83 nucleotides PP_3801: PP_3801 - putative Cation ABC transporter, periplasmic cation-binding protein, at 4,329,656 to 4,330,558 _3801 PP_3802: PP_3802 - putative Cation ABC transporter, ATP-binding protein, at 4,330,555 to 4,331,301 _3802 PP_3803: PP_3803 - putative Cation ABC transporter, permease protein, at 4,331,301 to 4,332,200 _3803 PP_3804: PP_3804 - conserved exported protein of unknown function, at 4,332,197 to 4,333,060 _3804 PP_3805: PP_3805 - lipoprotein required for swarming, at 4,333,144 to 4,334,196 _3805 Position (kb) 4331 4332 4333Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4330.409 kb on + strand, within PP_3801at 4330.410 kb on - strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.462 kb on + strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.463 kb on - strand, within PP_3801at 4330.478 kb on + strandat 4330.479 kb on - strandat 4330.493 kb on + strandat 4330.493 kb on + strandat 4330.493 kb on + strandat 4330.494 kb on - strandat 4330.494 kb on - strandat 4330.494 kb on - strandat 4330.801 kb on + strand, within PP_3802at 4330.801 kb on + strand, within PP_3802at 4330.802 kb on - strand, within PP_3802at 4331.105 kb on + strand, within PP_3802at 4331.105 kb on + strand, within PP_3802at 4331.106 kb on - strand, within PP_3802at 4331.106 kb on - strand, within PP_3802at 4331.133 kb on + strand, within PP_3802at 4331.352 kb on + strandat 4331.352 kb on + strandat 4331.353 kb on - strandat 4331.353 kb on - strandat 4331.373 kb on + strandat 4331.373 kb on + strandat 4331.374 kb on - strandat 4331.374 kb on - strandat 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strand, within PP_3803at 4331.535 kb on + strandat 4331.538 kb on - strand, within PP_3803at 4331.538 kb on - strand, within PP_3803at 4331.610 kb on - strand, within PP_3803at 4331.627 kb on + strand, within PP_3803at 4331.750 kb on + strand, within PP_3803at 4331.817 kb on + strand, within PP_3803at 4331.818 kb on - strand, within PP_3803at 4331.892 kb on + strand, within PP_3803at 4331.893 kb on - strand, within PP_3803at 4332.578 kb on + strand, within PP_3804at 4332.578 kb on + strand, within PP_3804at 4332.578 kb on + strand, within PP_3804at 4332.578 kb on + strand, within PP_3804at 4332.578 kb on + strand, within PP_3804at 4332.578 kb on + strand, within PP_3804at 4332.578 kb on + strand, within PP_3804at 4332.579 kb on - strand, within PP_3804at 4332.579 kb on - strand, within PP_3804at 4332.588 kb on - strand, within PP_3804at 4332.588 kb on - strand, within PP_3804at 4332.794 kb on + strand, within PP_3804at 4333.017 kb on + strandat 4333.017 kb on + strandat 4333.017 kb on + strandat 4333.018 kb on - strandat 4333.166 kb on + strandat 4333.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) pH 7
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4,330,409 + PP_3801 0.83 +0.1
4,330,410 - PP_3801 0.83 +0.9
4,330,462 + PP_3801 0.89 -2.3
4,330,462 + PP_3801 0.89 -0.2
4,330,462 + PP_3801 0.89 +0.4
4,330,463 - PP_3801 0.89 -0.8
4,330,463 - PP_3801 0.89 +0.2
4,330,463 - PP_3801 0.89 -0.7
4,330,478 + -0.3
4,330,479 - -0.8
4,330,493 + -0.8
4,330,493 + +0.5
4,330,493 + +0.3
4,330,494 - -0.2
4,330,494 - -0.1
4,330,494 - -2.1
4,330,801 + PP_3802 0.33 +1.0
4,330,801 + PP_3802 0.33 +1.0
4,330,802 - PP_3802 0.33 +0.2
4,331,105 + PP_3802 0.74 +2.2
4,331,105 + PP_3802 0.74 -2.4
4,331,106 - PP_3802 0.74 -0.3
4,331,106 - PP_3802 0.74 +0.3
4,331,133 + PP_3802 0.77 -0.1
4,331,352 + -1.4
4,331,352 + +0.5
4,331,353 - -0.7
4,331,353 - +0.2
4,331,373 + -0.1
4,331,373 + -0.9
4,331,374 - +3.0
4,331,374 - -0.1
4,331,535 + PP_3803 0.26 -0.2
4,331,535 + PP_3803 0.26 +0.8
4,331,535 + PP_3803 0.26 -0.7
4,331,535 + PP_3803 0.26 -1.1
4,331,535 + +0.6
4,331,538 - PP_3803 0.26 -1.4
4,331,538 - PP_3803 0.26 -2.7
4,331,610 - PP_3803 0.34 -1.8
4,331,627 + PP_3803 0.36 -1.0
4,331,750 + PP_3803 0.50 -1.8
4,331,817 + PP_3803 0.57 +0.6
4,331,818 - PP_3803 0.57 -1.2
4,331,892 + PP_3803 0.66 -0.8
4,331,893 - PP_3803 0.66 +1.8
4,332,578 + PP_3804 0.44 +0.2
4,332,578 + PP_3804 0.44 +0.6
4,332,578 + PP_3804 0.44 -0.2
4,332,578 + PP_3804 0.44 +0.5
4,332,578 + PP_3804 0.44 +0.3
4,332,578 + PP_3804 0.44 +1.2
4,332,578 + PP_3804 0.44 +1.5
4,332,579 - PP_3804 0.44 -0.1
4,332,579 - PP_3804 0.44 -0.4
4,332,588 - PP_3804 0.45 +0.2
4,332,588 - PP_3804 0.45 -0.3
4,332,794 + PP_3804 0.69 +1.0
4,333,017 + +0.4
4,333,017 + +0.5
4,333,017 + +0.2
4,333,018 - -0.2
4,333,166 + +0.7
4,333,167 - +0.7

Or see this region's nucleotide sequence