Strain Fitness in Pseudomonas putida KT2440 around PP_3294

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
3,727,214	-		PP_3292	0.66	-1.1
3,727,214	-		PP_3292	0.66	+0.1
3,727,215	+		PP_3292	0.66	-0.3
3,727,215	+		PP_3292	0.66	-0.6
3,727,215	+		PP_3292	0.66	-0.1
3,727,216	-				-1.1
3,727,216	-		PP_3292	0.66	-0.9
3,727,493	+				+0.9
3,727,589	+		PP_3293	0.23	+0.6
3,727,635	+		PP_3293	0.34	-0.2
3,727,636	-		PP_3293	0.34	+0.0
3,727,637	+		PP_3293	0.34	+0.3
3,727,637	+		PP_3293	0.34	-1.3
3,727,638	-		PP_3293	0.34	+0.2
3,727,638	-		PP_3293	0.34	-0.3
3,727,638	-		PP_3293	0.34	-0.1
3,727,638	-		PP_3293	0.34	-0.3
3,727,638	-		PP_3293	0.34	+0.3
3,727,638	-		PP_3293	0.34	+0.1
3,727,638	-		PP_3293	0.34	+0.6
3,727,727	+		PP_3293	0.55	+2.5
3,727,727	+		PP_3293	0.55	+0.4
3,727,728	-		PP_3293	0.55	+0.1
3,727,728	-		PP_3293	0.55	-1.6
3,727,730	+		PP_3293	0.56	-0.9
3,727,730	+		PP_3293	0.56	-0.3
3,727,730	+		PP_3293	0.56	-0.5
3,727,859	+		PP_3293	0.86	+1.5
3,727,978	+				+1.4
3,727,978	+				-0.1
3,727,979	-				-0.5
3,728,006	-				-0.0
3,728,019	+				+0.1
3,728,019	+				-0.7
3,728,019	+				-0.5
3,728,019	+				+0.9
3,728,019	+				+0.7
3,728,020	-				-0.1
3,728,053	+				+0.2
3,728,053	+				-0.2
3,728,054	-				-0.6
3,728,054	-				-0.1
3,728,057	+				-0.2
3,728,057	+				+0.1
3,728,058	-				-0.8
3,728,087	-				-0.8
3,728,125	+				+2.5
3,728,125	+				-0.0
3,728,126	-				+0.1
3,728,157	-				-0.5
3,728,236	+		PP_3294	0.12	+0.7
3,728,236	+		PP_3294	0.12	+1.0
3,728,237	-		PP_3294	0.12	+0.2
3,728,260	+		PP_3294	0.15	+0.5
3,728,552	-		PP_3294	0.47	-1.1
3,728,706	+		PP_3294	0.65	-1.7
3,728,768	-		PP_3294	0.72	+1.1
3,728,874	+		PP_3294	0.84	+0.9
3,728,875	-		PP_3294	0.84	+0.3
3,729,027	+				-0.5
3,729,085	-		PP_3295	0.11	+0.3
3,729,334	-		PP_3295	0.63	-0.8
3,729,354	-		PP_3295	0.67	-0.2
3,729,371	-		PP_3295	0.71	-0.2
3,729,492	+				+1.1
3,729,493	-				+0.2
3,729,494	+				-0.8
3,729,494	+				+0.6
3,729,495	-				-2.4
3,729,562	-		PP_3296	0.11	-0.1
3,729,661	-		PP_3296	0.34	+0.1
3,729,661	-		PP_3296	0.34	-0.0
3,729,700	+		PP_3296	0.43	+0.6
3,729,701	-		PP_3296	0.43	+0.2
3,729,701	-		PP_3296	0.43	-0.6
3,729,701	-		PP_3296	0.43	+0.2
3,729,721	+		PP_3296	0.48	+0.2
3,729,721	+		PP_3296	0.48	+0.3
3,729,722	-		PP_3296	0.48	+0.2
3,729,726	+		PP_3296	0.49	-0.1
3,729,727	-		PP_3296	0.49	+0.2
3,729,727	-		PP_3296	0.49	+0.3
3,729,727	-		PP_3296	0.49	-1.6
3,729,810	+		PP_3296	0.69	+0.2
3,729,811	-		PP_3296	0.69	-1.6
3,729,835	-		PP_3296	0.74	+0.0
3,729,901	+		PP_3296	0.89	-0.8
3,729,901	+		PP_3296	0.89	+0.0
3,729,901	+		PP_3296	0.89	-0.9
3,729,999	-				-0.9
3,730,005	-				-1.9
3,730,016	-				+0.7