Strain Fitness in Pseudomonas putida KT2440 around PP_2776

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
3,160,219	+		PP_2775	0.13	-1.5
3,160,220	-		PP_2775	0.13	+0.2
3,160,267	+		PP_2775	0.17	+0.3
3,160,267	+		PP_2775	0.17	+0.1
3,160,378	+		PP_2775	0.28	-0.5
3,160,378	+		PP_2775	0.28	+0.1
3,160,423	+		PP_2775	0.32	-0.4
3,160,424	-		PP_2775	0.32	+2.3
3,160,424	-		PP_2775	0.32	-0.3
3,160,444	+		PP_2775	0.34	-0.1
3,160,444	+		PP_2775	0.34	+0.3
3,160,456	+		PP_2775	0.35	+1.3
3,160,471	+		PP_2775	0.37	+0.6
3,160,480	-		PP_2775	0.38	-0.6
3,160,480	-		PP_2775	0.38	-0.2
3,160,490	-		PP_2775	0.38	-0.7
3,160,585	+		PP_2775	0.48	+0.2
3,160,586	-		PP_2775	0.48	-0.8
3,160,587	+		PP_2775	0.48	+0.2
3,160,684	+		PP_2775	0.57	+0.1
3,160,685	-		PP_2775	0.57	-0.0
3,160,717	+		PP_2775	0.60	-0.1
3,160,816	+		PP_2775	0.70	+0.2
3,161,247	+		PP_2776	0.13	+0.3
3,161,310	+		PP_2776	0.19	-0.2
3,161,743	+		PP_2776	0.66	+1.5
3,161,743	+		PP_2776	0.66	-0.6
3,161,743	+		PP_2776	0.66	+1.3
3,161,839	-		PP_2776	0.77	+0.5
3,161,911	+		PP_2776	0.85	+1.2
3,162,186	+				-0.3
3,162,187	-				-2.5
3,162,290	-				+1.6
3,162,295	-				+0.2
3,162,295	-				+1.0
3,162,389	+				+0.1
3,162,425	-				+0.4
3,162,539	-				+0.6
3,162,556	+				-0.3
3,162,597	+				+0.3
3,162,598	-				-2.2
3,162,619	+				-0.7
3,162,671	+				+3.7
3,162,671	+				+0.4
3,162,672	-				+1.2
3,162,672	-				-0.9
3,162,681	-				-0.2
3,162,708	-		PP_2777	0.13	+0.7
3,162,734	+		PP_2777	0.18	+0.2
3,162,735	-		PP_2777	0.18	+0.7
3,162,801	+		PP_2777	0.29	+0.6
3,162,933	+				+0.3
3,162,934	-		PP_2777	0.53	-0.8
3,162,998	+		PP_2777	0.64	-0.0
3,162,999	-		PP_2777	0.64	-1.2
3,163,032	+		PP_2777	0.70	-0.1
3,163,032	+		PP_2777	0.70	-0.7