Strain Fitness in Pseudomonas putida KT2440 around PP_1938

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
2,191,711	+		PP_1937	0.79	+0.7
2,191,711	+		PP_1937	0.79	-0.7
2,191,712	-		PP_1937	0.79	+0.1
2,191,712	-				+0.1
2,191,721	-		PP_1937	0.79	-0.9
2,191,735	-		PP_1937	0.80	+0.9
2,191,901	+		PP_1937	0.85	-0.7
2,191,902	-		PP_1937	0.85	-0.4
2,191,994	+		PP_1937	0.88	+0.3
2,191,995	-		PP_1937	0.88	+0.2
2,191,995	-		PP_1937	0.88	-0.1
2,192,043	-		PP_1937	0.89	-0.7
2,192,048	+		PP_1937	0.89	+0.5
2,192,049	-		PP_1937	0.89	+0.6
2,192,101	-				+0.2
2,192,101	-				-0.3
2,192,121	+				+0.1
2,192,122	-				+0.1
2,192,122	-				-1.4
2,192,246	+				-0.8
2,192,246	+				+0.1
2,192,268	-				+0.1
2,192,268	-				-0.6
2,192,295	+				-0.5
2,192,359	-				-0.7
2,192,359	-				-0.3
2,192,459	-				-0.2
2,192,467	-				-0.8
2,192,505	-				-0.2
2,192,505	-				+1.6
2,192,527	-				+0.5
2,192,555	-				-0.5
2,192,565	+				-1.3
2,192,566	-				+1.2
2,192,593	-				+0.2
2,192,624	+				+0.6
2,192,624	+				+0.5
2,192,625	-				+0.9
2,192,752	+		PP_1938	0.50	+1.4
2,192,789	-		PP_1938	0.62	-0.1
2,192,910	+				+0.6
2,192,910	+				-0.5
2,192,910	+				+0.0
2,192,911	-				-0.2
2,192,911	-				+0.2
2,192,911	-				-0.1
2,192,911	-				-0.1
2,192,911	-				-1.9
2,192,917	-				-0.3
2,192,926	+				+1.3
2,192,926	+				-0.9
2,192,926	+				+0.9
2,192,927	-				-0.5
2,192,927	-				+0.6
2,192,932	+				-1.0
2,192,950	+				+0.9
2,192,950	+				-0.9
2,192,950	+				+0.4
2,192,950	+				-0.2
2,192,950	+				+0.4
2,192,954	+				+0.2
2,192,954	+				+0.5
2,192,954	+				+0.9
2,192,955	-				+0.2
2,193,049	+				-0.8
2,193,049	+				+0.9
2,193,049	+				-0.9
2,193,050	-				-0.4
2,193,050	-				-2.2
2,193,050	-				+0.3
2,193,050	-				-0.7
2,193,050	-				-0.2
2,193,100	+				+0.6
2,193,100	+				+0.6
2,193,100	+				+0.0
2,193,100	+				+0.0
2,193,100	+				-0.9
2,193,101	-				-0.5
2,193,101	-				+1.4
2,193,103	+				-0.2
2,193,104	-				-0.0
2,193,119	-				-1.2
2,193,138	+				+0.3
2,193,138	+				-1.8
2,193,199	+				-0.5
2,193,199	+				-0.5
2,193,199	+				+0.5
2,193,199	+				+1.4
2,193,199	+				-0.3
2,193,200	-				-0.1
2,193,200	-				-0.4
2,193,200	-				+0.6
2,193,200	-				+0.1
2,193,296	+				-0.4
2,193,315	+				+0.2
2,193,315	+				+0.4
2,193,488	+				+0.1
2,193,488	+				+0.2
2,193,513	-				+0.4
2,193,578	-				+2.2
2,193,777	+		PP_1940	0.12	-0.4
2,193,777	+		PP_1940	0.12	+0.0
2,193,838	+		PP_1940	0.15	+0.1
2,193,902	-		PP_1940	0.18	-0.1