Strain Fitness in Pseudomonas putida KT2440 around PP_1655

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,848,520	+				-0.6
1,848,521	-				+0.4
1,848,525	+				-0.2
1,848,526	-				-1.1
1,848,526	-				-2.2
1,848,554	+				-0.2
1,848,555	-				-1.0
1,848,555	-				-1.0
1,848,602	-				-0.2
1,848,647	-				-1.0
1,848,647	-				+1.8
1,848,670	+		PP_1654	0.12	+0.2
1,848,671	-		PP_1654	0.12	+1.8
1,848,887	+		PP_1654	0.36	+1.8
1,848,888	-		PP_1654	0.36	-3.7
1,849,023	-		PP_1654	0.51	+0.2
1,849,023	-		PP_1654	0.51	+0.8
1,849,023	-		PP_1654	0.51	-0.2
1,849,103	-		PP_1654	0.60	-1.2
1,849,125	-		PP_1654	0.63	-0.5
1,849,218	-		PP_1654	0.73	+0.8
1,849,428	-				-1.2
1,849,458	-				+0.5
1,849,607	-		PP_1655	0.11	+0.6
1,849,607	-		PP_1655	0.11	+1.3
1,850,014	-		PP_1655	0.41	+0.9
1,850,014	-		PP_1655	0.41	+0.9
1,850,470	-		PP_1655	0.74	+1.1
1,850,470	-		PP_1655	0.74	+1.2
1,850,548	-		PP_1655	0.80	+0.3
1,850,676	-		PP_1655	0.89	+0.2
1,850,676	-		PP_1655	0.89	+0.3
1,850,676	-		PP_1655	0.89	+0.6
1,850,676	-		PP_1655	0.89	+0.3
1,850,676	-		PP_1655	0.89	+0.6
1,850,884	-				+1.8
1,850,884	-				+0.8
1,850,884	-				+0.8
1,850,905	+				+0.6
1,850,906	-				+1.8
1,850,920	-				+1.8
1,850,959	+				+1.8
1,850,960	-				+1.8
1,850,960	-				+1.8
1,850,991	+				-0.7
1,850,991	+				+1.8
1,850,992	-				+1.8
1,851,054	+				-0.2
1,851,054	+				+0.8
1,851,097	+				-2.0
1,851,097	+				+0.5
1,851,097	+				+0.8
1,851,185	+		PP_1656	0.12	-2.2
1,851,186	-				-1.7
1,851,342	+		PP_1656	0.19	+1.8
1,851,343	-		PP_1656	0.19	+1.8
1,851,491	+		PP_1656	0.26	+1.8
1,851,491	+		PP_1656	0.26	+1.8
1,851,491	+		PP_1656	0.26	+1.8
1,851,492	-		PP_1656	0.26	+1.8
1,851,492	-		PP_1656	0.26	+1.8
1,851,578	+		PP_1656	0.30	+1.8
1,851,712	+		PP_1656	0.36	+1.8
1,851,712	+		PP_1656	0.36	+1.8
1,851,712	+		PP_1656	0.36	+0.2
1,851,712	+		PP_1656	0.36	-1.5
1,851,712	+				+1.8
1,851,712	+		PP_1656	0.36	+0.8
1,851,712	+		PP_1656	0.36	+0.8
1,851,712	+		PP_1656	0.36	+0.8
1,851,713	-		PP_1656	0.36	+1.8
1,851,713	-		PP_1656	0.36	+1.8
1,851,713	-		PP_1656	0.36	+0.8
1,851,713	-		PP_1656	0.36	+1.8
1,851,716	+		PP_1656	0.36	+1.8
1,851,716	+		PP_1656	0.36	+1.8
1,851,717	-		PP_1656	0.36	+1.8
1,851,717	-		PP_1656	0.36	+1.8
1,851,717	-				+0.8
1,851,768	-		PP_1656	0.38	+1.8
1,851,815	+		PP_1656	0.40	+1.8
1,851,816	-		PP_1656	0.40	+1.8