Strain Fitness in Pseudomonas putida KT2440 around PP_1071

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,224,680	-				+0.2
1,224,769	+		PP_1070	0.12	-0.3
1,224,770	-		PP_1070	0.12	-1.5
1,224,770	-		PP_1070	0.12	+0.3
1,224,770	-		PP_1070	0.12	-0.9
1,224,770	-		PP_1070	0.12	+0.7
1,224,958	+		PP_1070	0.37	+0.1
1,224,958	+		PP_1070	0.37	+0.6
1,224,959	-		PP_1070	0.38	-1.0
1,224,959	-		PP_1070	0.38	+0.2
1,224,959	-		PP_1070	0.38	+0.0
1,225,172	-		PP_1070	0.66	+0.1
1,225,223	-		PP_1070	0.73	-0.0
1,225,351	+				+0.7
1,225,352	-				+0.4
1,225,363	+				-0.4
1,225,418	-				+0.2
1,225,418	-				-1.2
1,225,502	+				-1.4
1,225,503	-				+0.9
1,225,503	-				-0.2
1,225,509	+				-0.0
1,225,557	+				+0.3
1,225,557	+				-2.6
1,225,561	+				+0.1
1,225,561	+				-1.0
1,225,562	-				+0.2
1,225,695	-		PP_1071	0.14	+0.4
1,225,724	+		PP_1071	0.17	-0.3
1,226,058	-		PP_1071	0.53	+0.3
1,226,058	-		PP_1071	0.53	+0.5
1,226,206	-		PP_1071	0.69	+0.7
1,226,232	-		PP_1071	0.72	+0.2
1,226,232	-		PP_1071	0.72	+0.9
1,226,232	-		PP_1071	0.72	+0.6
1,226,232	-		PP_1071	0.72	-0.8
1,226,333	+		PP_1071	0.83	+0.3
1,226,482	-				-0.1
1,226,552	-				-0.2
1,226,552	-				+0.4
1,226,623	-				+0.5
1,226,633	+				+0.1
1,226,633	+				+0.6
1,226,634	-				-0.0
1,226,634	-				+0.1
1,226,733	+				-1.0
1,226,733	+				+1.0
1,226,757	+				+0.1
1,226,757	+				+0.4
1,226,757	+				+1.3
1,226,758	-				+0.3
1,226,758	-				-0.1
1,226,758	-				+0.2
1,226,758	-				-1.3
1,226,758	-				+0.3
1,226,758	-				+0.1
1,226,786	-				-0.9
1,226,888	+				-0.5
1,226,928	+				-0.5
1,226,928	+				+0.2
1,226,928	+				-0.6
1,226,928	+				+0.4
1,226,929	-				+0.3
1,226,929	-				-0.2
1,226,929	-				+0.0
1,226,929	-				-2.0
1,226,929	-				+1.0
1,226,929	-				-0.0
1,227,077	+				-0.3
1,227,136	+				+0.2
1,227,136	+				+0.3
1,227,136	+				+0.0
1,227,136	+				+0.5
1,227,136	+				+0.3
1,227,136	+				+1.0
1,227,136	+				+0.2
1,227,136	+				-0.6
1,227,137	-				+0.2
1,227,137	-				+0.2
1,227,137	-				+0.4
1,227,180	+				+0.6
1,227,180	+				+1.0
1,227,180	+				+0.2
1,227,180	+				+0.2
1,227,180	+				+0.2
1,227,181	-				+1.4
1,227,181	-				-1.8
1,227,181	-				+0.4
1,227,184	+				-1.0
1,227,184	+				-0.4
1,227,184	+				-0.2
1,227,184	+				-0.3
1,227,185	-				+1.8
1,227,185	-				+0.2
1,227,185	-				+1.4
1,227,314	-		PP_1072	0.11	-0.2
1,227,314	-		PP_1072	0.11	+0.0
1,227,314	-		PP_1072	0.11	-0.7
1,227,338	+		PP_1072	0.12	-0.3
1,227,338	+		PP_1072	0.12	+0.3
1,227,338	+		PP_1072	0.12	+0.8
1,227,339	-		PP_1072	0.12	-0.2
1,227,339	-		PP_1072	0.12	+0.1