Strain Fitness in Pseudomonas putida KT2440 around PP_0246

Experiment: D-Glucose (C) pH 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0245 and PP_0246 overlap by 44 nucleotidesPP_0246 and PP_0247 are separated by 13 nucleotides PP_0245: PP_0245 - putative transcriptional accessory protein, at 298,540 to 301,125 _0245 PP_0246: PP_0246 - two-component system DNA-binding response transcriptional dual regulator, at 301,082 to 301,822 _0246 PP_0247: PP_0247 - Osmolarity sensor protein EnvZ, at 301,836 to 303,149 _0247 Position (kb) 301 302Strain fitness (log2 ratio) -1 0 1 2 3at 300.222 kb on + strand, within PP_0245at 300.223 kb on - strand, within PP_0245at 300.223 kb on - strand, within PP_0245at 300.248 kb on + strand, within PP_0245at 300.248 kb on + strand, within PP_0245at 300.249 kb on - strand, within PP_0245at 300.323 kb on + strand, within PP_0245at 300.324 kb on - strand, within PP_0245at 300.324 kb on - strand, within PP_0245at 300.380 kb on + strand, within PP_0245at 300.381 kb on - strand, within PP_0245at 300.381 kb on - strand, within PP_0245at 300.551 kb on + strand, within PP_0245at 300.561 kb on - strand, within PP_0245at 300.561 kb on - strand, within PP_0245at 300.561 kb on - strand, within PP_0245at 300.843 kb on + strand, within PP_0245at 300.866 kb on + strand, within PP_0245at 300.867 kb on - strandat 300.867 kb on - strandat 300.888 kb on + strandat 300.889 kb on - strandat 300.943 kb on + strandat 300.943 kb on + strandat 300.943 kb on + strandat 300.943 kb on + strandat 300.944 kb on - strandat 300.944 kb on - strandat 300.944 kb on - strandat 300.945 kb on + strandat 300.946 kb on - strandat 300.946 kb on - strandat 300.946 kb on - strandat 301.078 kb on - strandat 301.078 kb on - strandat 301.185 kb on - strand, within PP_0246at 301.403 kb on + strand, within PP_0246at 301.527 kb on - strand, within PP_0246at 301.761 kb on - strandat 301.761 kb on - strandat 301.787 kb on + strandat 301.787 kb on + strandat 301.788 kb on - strandat 301.932 kb on + strandat 301.933 kb on - strandat 301.972 kb on - strand, within PP_0247at 301.972 kb on - strand, within PP_0247at 302.004 kb on + strand, within PP_0247at 302.005 kb on - strand, within PP_0247at 302.005 kb on - strand, within PP_0247at 302.058 kb on - strand, within PP_0247at 302.058 kb on - strand, within PP_0247at 302.106 kb on + strand, within PP_0247at 302.106 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.118 kb on + strand, within PP_0247at 302.119 kb on - strand, within PP_0247at 302.119 kb on - strand, within PP_0247at 302.119 kb on - strand, within PP_0247at 302.241 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.448 kb on + strand, within PP_0247at 302.449 kb on - strand, within PP_0247at 302.449 kb on - strand, within PP_0247at 302.731 kb on - strand, within PP_0247at 302.731 kb on - strand, within PP_0247

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) pH 7
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300,222 + PP_0245 0.65 +0.6
300,223 - PP_0245 0.65 -1.5
300,223 - PP_0245 0.65 -0.9
300,248 + PP_0245 0.66 +3.6
300,248 + PP_0245 0.66 -0.8
300,249 - PP_0245 0.66 +0.9
300,323 + PP_0245 0.69 +0.4
300,324 - PP_0245 0.69 -0.6
300,324 - PP_0245 0.69 +0.2
300,380 + PP_0245 0.71 +0.5
300,381 - PP_0245 0.71 +0.4
300,381 - PP_0245 0.71 -0.8
300,551 + PP_0245 0.78 +0.7
300,561 - PP_0245 0.78 -0.6
300,561 - PP_0245 0.78 +0.3
300,561 - PP_0245 0.78 +0.5
300,843 + PP_0245 0.89 +0.7
300,866 + PP_0245 0.90 +0.9
300,867 - -0.1
300,867 - -0.7
300,888 + +0.3
300,889 - +0.2
300,943 + -0.1
300,943 + +0.4
300,943 + +0.8
300,943 + -0.2
300,944 - -0.3
300,944 - +0.4
300,944 - +0.6
300,945 + -0.5
300,946 - +0.4
300,946 - +0.2
300,946 - +0.4
301,078 - +0.1
301,078 - -0.4
301,185 - PP_0246 0.14 +0.1
301,403 + PP_0246 0.43 +1.4
301,527 - PP_0246 0.60 +1.9
301,761 - -0.4
301,761 - -0.8
301,787 + +0.4
301,787 + -0.2
301,788 - -0.2
301,932 + +0.4
301,933 - +0.5
301,972 - PP_0247 0.10 +0.7
301,972 - PP_0247 0.10 +0.2
302,004 + PP_0247 0.13 -1.1
302,005 - PP_0247 0.13 -0.2
302,005 - PP_0247 0.13 -0.2
302,058 - PP_0247 0.17 +0.5
302,058 - PP_0247 0.17 -0.2
302,106 + PP_0247 0.21 -0.0
302,106 + PP_0247 0.21 +1.4
302,118 + PP_0247 0.21 -0.3
302,118 + PP_0247 0.21 +0.4
302,118 + PP_0247 0.21 +0.3
302,118 + PP_0247 0.21 +0.1
302,119 - PP_0247 0.22 +0.0
302,119 - PP_0247 0.22 +1.4
302,119 - PP_0247 0.22 +0.3
302,241 + PP_0247 0.31 -0.1
302,448 + PP_0247 0.47 +0.8
302,448 + PP_0247 0.47 +0.8
302,448 + PP_0247 0.47 +0.6
302,449 - PP_0247 0.47 +1.7
302,449 - PP_0247 0.47 +0.1
302,731 - PP_0247 0.68 -0.1
302,731 - PP_0247 0.68 -0.3

Or see this region's nucleotide sequence