Strain Fitness in Pseudomonas putida KT2440 around PP_5475

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,767,912	+		PP_1577	0.80	+0.6
1,767,913	-		PP_1577	0.80	+1.8
1,768,107	-		PP_1577	0.88	+0.0
1,768,231	+				-0.3
1,768,231	+				-0.2
1,768,232	-				-0.1
1,768,232	-				-0.4
1,768,241	+				-0.1
1,768,242	-				+0.8
1,768,246	-				-1.8
1,768,344	-				-2.1
1,768,385	+				-0.5
1,768,421	+				-0.0
1,768,421	+				+0.6
1,768,422	-				+0.5
1,768,422	-				+0.1
1,768,422	-				+1.0
1,768,484	+		PP_1578	0.17	+0.1
1,768,484	+		PP_1578	0.17	-1.6
1,768,485	-		PP_1578	0.18	+0.7
1,768,485	-		PP_1578	0.18	+1.1
1,768,485	-		PP_1578	0.18	-1.3
1,768,620	+		PP_1578	0.46	+0.0
1,768,703	+		PP_1578	0.63	-0.0
1,768,704	-		PP_1578	0.63	-0.4
1,768,704	-		PP_1578	0.63	-1.4
1,768,704	-		PP_1578	0.63	+0.8
1,768,704	-		PP_1578	0.63	+0.1
1,768,802	+		PP_1578	0.84	+0.0
1,768,837	+				+0.5
1,768,837	+				-1.2
1,768,837	+				-0.4
1,768,838	-				-0.3
1,768,838	-				+0.5
1,768,838	-				-0.0
1,768,841	+				+0.3
1,768,842	-				+2.2
1,768,842	-				-0.4
1,768,842	-				-0.2
1,768,842	-				+0.2
1,768,872	-				-0.4
1,768,875	+				-0.4
1,768,876	-				-0.9
1,768,876	-				+0.3
1,768,887	+				+1.3
1,768,891	+				-0.0
1,768,891	+				+0.1
1,768,892	-				-0.3
1,768,892	-				+0.5
1,768,892	-				-0.3
1,768,892	-				+0.1
1,768,945	+		PP_5475	0.18	+0.2
1,769,108	-		PP_5475	0.61	+1.4
1,769,245	+				+0.1
1,769,245	+				-0.5
1,769,248	+				+0.0
1,769,458	+				+0.1
1,769,664	+		PP_1579	0.14	-0.3
1,769,665	-		PP_1579	0.14	+1.5
1,769,671	+		PP_1579	0.14	-1.1
1,769,671	+		PP_1579	0.14	-0.6
1,769,671	+		PP_1579	0.14	+0.3
1,769,671	+		PP_1579	0.14	-1.0
1,769,671	+		PP_1579	0.14	+0.9
1,769,671	+		PP_1579	0.14	-0.5
1,769,671	+		PP_1579	0.14	-0.5
1,769,672	-		PP_1579	0.14	+0.8
1,769,672	-		PP_1579	0.14	-0.8
1,769,672	-		PP_1579	0.14	+0.0
1,769,672	-		PP_1579	0.14	-0.5
1,769,672	-		PP_1579	0.14	-0.1
1,769,672	-		PP_1579	0.14	-0.4
1,769,682	+		PP_1579	0.14	-0.0
1,769,683	-		PP_1579	0.14	-0.5
1,769,841	+		PP_1579	0.20	+0.5
1,769,890	-		PP_1579	0.21	-1.5
1,769,935	+		PP_1579	0.23	+0.1
1,769,936	-		PP_1579	0.23	-2.1
1,769,936	-				-0.4
1,769,972	-		PP_1579	0.24	-1.0
1,770,065	+		PP_1579	0.27	+0.3
1,770,066	-		PP_1579	0.27	+0.2
1,770,087	+		PP_1579	0.28	+0.0
1,770,088	-		PP_1579	0.28	+0.0
1,770,088	-				+1.8
1,770,088	-		PP_1579	0.28	+0.2
1,770,189	+		PP_1579	0.31	-0.0
1,770,210	+		PP_1579	0.32	+0.7
1,770,211	-		PP_1579	0.32	-0.0
1,770,219	+		PP_1579	0.32	-0.3