Strain Fitness in Pseudomonas putida KT2440 around PP_5274

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
6,022,247	-		PP_5273	0.35	+0.1
6,022,309	+		PP_5273	0.40	+2.4
6,022,309	+		PP_5273	0.40	+0.3
6,022,309	+		PP_5273	0.40	-0.5
6,022,309	+		PP_5273	0.40	-1.6
6,022,309	+		PP_5273	0.40	-0.0
6,022,309	+		PP_5273	0.40	+0.1
6,022,309	+		PP_5273	0.40	-0.7
6,022,309	+		PP_5273	0.40	+0.2
6,022,309	+		PP_5273	0.40	+0.4
6,022,309	+		PP_5273	0.40	+0.7
6,022,309	+		PP_5273	0.40	+1.8
6,022,310	-		PP_5273	0.40	+1.0
6,022,310	-		PP_5273	0.40	+0.3
6,022,310	-		PP_5273	0.40	-0.2
6,022,310	-		PP_5273	0.40	+0.6
6,022,439	-		PP_5273	0.50	-1.2
6,022,461	+		PP_5273	0.52	-0.2
6,022,461	+		PP_5273	0.52	-0.6
6,022,461	+		PP_5273	0.52	+2.4
6,022,462	-		PP_5273	0.52	-0.0
6,022,496	+		PP_5273	0.54	+0.1
6,022,513	+		PP_5273	0.56	-0.1
6,022,567	+		PP_5273	0.60	-0.4
6,022,568	-		PP_5273	0.60	+1.4
6,022,568	-		PP_5273	0.60	+1.2
6,022,626	+		PP_5273	0.64	-0.2
6,022,626	+		PP_5273	0.64	+1.4
6,022,660	+		PP_5273	0.67	-0.2
6,022,661	-		PP_5273	0.67	+1.1
6,022,663	+		PP_5273	0.67	+0.3
6,022,663	+		PP_5273	0.67	-0.4
6,022,664	-		PP_5273	0.67	+0.6
6,022,664	-		PP_5273	0.67	-0.1
6,022,712	-		PP_5273	0.71	-1.0
6,022,745	-		PP_5273	0.74	+0.8
6,022,802	-		PP_5273	0.78	+1.0
6,022,802	-		PP_5273	0.78	-0.2
6,022,880	-		PP_5273	0.84	-1.0
6,022,880	-		PP_5273	0.84	-0.3
6,022,883	-		PP_5273	0.84	+1.3
6,022,894	+		PP_5273	0.85	-0.3
6,022,894	+		PP_5273	0.85	-0.0
6,023,120	+				-0.9
6,023,121	-				-0.2
6,023,121	-				+0.0
6,023,333	+		PP_5274	0.32	+1.2
6,023,485	-		PP_5274	0.79	+0.1
6,023,485	-		PP_5274	0.79	+0.7
6,023,522	+				-1.6
6,023,522	+				-0.9
6,023,523	-				+1.4
6,023,523	-				-0.7
6,023,523	-				-0.1
6,023,533	+				+0.1
6,023,533	+				+0.4
6,023,534	-				+0.1
6,023,541	+				-0.1
6,023,542	-				-2.4
6,023,542	-				-0.2
6,023,544	+				-0.4
6,023,545	-				+0.0
6,023,633	-				-1.5
6,023,667	-				+1.4
6,023,696	-				+0.2
6,023,776	+		PP_5275	0.13	-0.9
6,023,799	+		PP_5275	0.15	-0.0
6,023,800	-				+2.4
6,024,058	+		PP_5275	0.32	+0.6
6,024,058	+				+0.8
6,024,061	+		PP_5275	0.32	+1.0
6,024,061	+		PP_5275	0.32	-0.0
6,024,061	+		PP_5275	0.32	+0.2
6,024,061	+		PP_5275	0.32	-0.7
6,024,061	+		PP_5275	0.32	-1.1
6,024,079	-		PP_5275	0.34	-0.7
6,024,157	-		PP_5275	0.39	-0.6
6,024,403	+		PP_5275	0.55	-0.5
6,024,403	+				+1.8
6,024,404	-		PP_5275	0.55	+0.4
6,024,404	-		PP_5275	0.55	+0.4
6,024,454	+		PP_5275	0.59	+0.1
6,024,455	-		PP_5275	0.59	-0.7
6,024,484	+				+2.4
6,024,485	-		PP_5275	0.61	+0.7
6,024,499	+		PP_5275	0.62	+0.1
6,024,500	-		PP_5275	0.62	+1.8
6,024,500	-		PP_5275	0.62	+0.1
6,024,500	-		PP_5275	0.62	-1.4
6,024,501	+		PP_5275	0.62	-0.8
6,024,501	+		PP_5275	0.62	+0.4
6,024,501	+		PP_5275	0.62	+0.5
6,024,501	+		PP_5275	0.62	-1.0
6,024,501	+		PP_5275	0.62	+0.1
6,024,501	+		PP_5275	0.62	-0.5
6,024,502	-		PP_5275	0.62	-0.6
6,024,502	-		PP_5275	0.62	-0.6
6,024,502	-		PP_5275	0.62	+0.0
6,024,502	-		PP_5275	0.62	-0.6
6,024,502	-		PP_5275	0.62	+0.1
6,024,505	+		PP_5275	0.62	-2.2
6,024,506	-		PP_5275	0.62	+0.9
6,024,506	-		PP_5275	0.62	+0.3