Strain Fitness in Pseudomonas putida KT2440 around PP_4785

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
5,447,821	+				+0.2
5,447,822	-				-1.6
5,447,822	-				+0.5
5,447,848	+				-1.3
5,447,848	+				-1.0
5,447,849	-				+1.6
5,447,887	+				+0.8
5,447,887	+				+0.8
5,447,888	-				-0.6
5,447,892	-				-1.1
5,447,892	-				+0.6
5,447,948	+				+1.4
5,447,949	-				+0.7
5,447,949	-				+1.2
5,447,949	-				+0.6
5,447,965	-				+0.6
5,447,972	-				-0.9
5,447,972	-				+0.2
5,448,011	+				+0.4
5,448,234	+		PP_4785	0.38	-0.8
5,448,234	+		PP_4785	0.38	+0.5
5,448,235	-		PP_4785	0.39	-0.8
5,448,235	-		PP_4785	0.39	+0.6
5,448,237	+		PP_4785	0.39	-0.1
5,448,237	+		PP_4785	0.39	-0.8
5,448,238	-		PP_4785	0.39	+1.5
5,448,238	-		PP_4785	0.39	+1.4
5,448,238	-		PP_4785	0.39	+0.5
5,448,238	-		PP_4785	0.39	-1.4
5,448,238	-		PP_4785	0.39	+1.1
5,448,238	-		PP_4785	0.39	-0.6
5,448,240	+		PP_4785	0.40	-0.3
5,448,240	+		PP_4785	0.40	+0.2
5,448,241	-		PP_4785	0.40	-0.8
5,448,382	-		PP_4785	0.66	+0.2
5,448,382	-		PP_4785	0.66	+1.0
5,448,513	+		PP_4785	0.90	+0.9
5,448,514	-		PP_4785	0.90	-1.7
5,448,679	-		PP_4786	0.32	+0.2
5,448,818	-				+1.4
5,448,818	-		PP_4786	0.75	+0.1
5,448,832	+		PP_4786	0.79	+0.6
5,448,832	+		PP_4786	0.79	-2.6
5,448,833	-		PP_4786	0.80	+0.7
5,448,833	-		PP_4786	0.80	+0.1
5,448,833	-		PP_4786	0.80	+0.5
5,448,833	-		PP_4786	0.80	+0.9
5,448,872	+				+0.7
5,448,873	-				+0.1
5,448,874	+				-0.4
5,448,874	+				+0.7
5,448,874	+				+0.2
5,448,911	+				-1.7
5,448,911	+				-0.4
5,448,911	+				-0.1
5,448,922	+				-0.8
5,448,923	-				-0.5
5,448,941	+				+0.5
5,448,941	+				-0.1
5,448,942	-				-0.1
5,448,942	-				-0.1
5,448,942	-				-0.2
5,448,942	-				-0.6
5,448,942	-				+1.2
5,449,038	+				+0.7
5,449,038	+				-0.1
5,449,039	-				+0.1
5,449,039	-				+0.1
5,449,039	-				+1.8
5,449,039	-				+0.5
5,449,039	-				-1.1
5,449,042	+				-0.2
5,449,042	+				-0.2
5,449,042	+				+0.1
5,449,042	+				-1.3
5,449,043	-				+0.8
5,449,043	-				+0.1
5,449,086	+				-0.6
5,449,086	+				+2.5
5,449,145	+				-0.5
5,449,145	+				+0.3
5,449,145	+				+0.9
5,449,145	+				+0.2