Strain Fitness in Pseudomonas putida KT2440 around PP_4139

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
4,675,192	-				-0.7
4,675,192	-				-0.5
4,675,215	+				-0.4
4,675,272	+				-0.2
4,675,287	+				-0.0
4,675,319	-				-0.2
4,675,337	+				+0.2
4,675,372	+				-1.2
4,675,373	-				-0.4
4,675,373	-				+0.7
4,675,526	+		PP_4138	0.22	+0.1
4,675,527	-		PP_4138	0.22	-0.6
4,675,527	-		PP_4138	0.22	+0.1
4,675,724	+		PP_4138	0.57	+1.2
4,675,725	-		PP_4138	0.57	+0.2
4,675,725	-		PP_4138	0.57	-0.0
4,675,725	-		PP_4138	0.57	-0.2
4,675,813	-		PP_4138	0.73	-0.8
4,675,823	+		PP_4138	0.75	+0.0
4,675,910	+				-0.6
4,675,911	-				+0.1
4,675,911	-				+0.4
4,675,992	+				-0.6
4,675,993	-				-0.1
4,676,001	+				+0.3
4,676,001	+				-0.2
4,676,002	-				+0.8
4,676,002	-				+0.4
4,676,002	-				+0.1
4,676,002	-				-2.0
4,676,002	-				-0.1
4,676,005	+				-0.3
4,676,006	-				-0.7
4,676,007	+				-0.5
4,676,007	+				-1.5
4,676,007	+				-1.6
4,676,008	-				-1.9
4,676,077	+				+0.2
4,676,087	+				+0.2
4,676,088	-				-0.5
4,676,088	-				+0.2
4,676,100	+				-0.6
4,676,100	+				-0.7
4,676,101	-				-0.2
4,676,101	-				+0.2
4,676,101	-				-0.2
4,676,133	-				+0.0
4,676,176	+		PP_4139	0.25	+0.3
4,676,177	-		PP_4139	0.25	+0.9
4,676,177	-		PP_4139	0.25	-0.3
4,676,177	-		PP_4139	0.25	+0.5
4,676,249	-		PP_4139	0.58	+0.8
4,676,249	-		PP_4139	0.58	-0.1
4,676,356	-				-0.9
4,676,356	-				+1.9
4,676,439	+				-0.6
4,676,439	+				-0.6
4,676,440	-				-0.1
4,676,440	-				+0.3
4,676,685	-		PP_4140	0.16	+0.4
4,676,859	-		PP_4140	0.24	-0.8
4,676,871	+		PP_4140	0.24	-1.4
4,676,871	+		PP_4140	0.24	-0.1
4,676,872	-		PP_4140	0.24	-0.2
4,676,872	-		PP_4140	0.24	+0.8
4,676,925	-		PP_4140	0.27	+0.5
4,677,015	+		PP_4140	0.31	+0.0
4,677,015	+		PP_4140	0.31	+0.8
4,677,273	+		PP_4140	0.42	-0.9
4,677,276	+		PP_4140	0.42	-0.1
4,677,276	+		PP_4140	0.42	-0.3
4,677,290	-		PP_4140	0.43	-0.0
4,677,290	-		PP_4140	0.43	+0.4