Strain Fitness in Pseudomonas putida KT2440 around PP_3715

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
4,236,279	+				+1.7
4,236,279	+		PP_3713	0.47	-0.9
4,236,280	-		PP_3713	0.47	-0.4
4,236,286	-		PP_3713	0.48	+0.2
4,236,286	-		PP_3713	0.48	+0.3
4,236,444	+		PP_3713	0.65	+1.3
4,236,444	+		PP_3713	0.65	-0.7
4,236,444	+		PP_3713	0.65	+0.1
4,236,444	+		PP_3713	0.65	+0.5
4,236,444	+		PP_3713	0.65	-0.2
4,236,444	+		PP_3713	0.65	+0.1
4,236,445	-		PP_3713	0.65	+0.3
4,236,779	+				+2.3
4,236,779	+				+0.1
4,236,779	+				+0.6
4,236,780	-				+0.7
4,236,786	+				+0.4
4,236,786	+				-0.3
4,236,786	+				+0.3
4,236,787	-				+0.7
4,236,787	-				+1.3
4,236,787	-				-0.3
4,236,787	-				+0.7
4,236,804	+				+0.2
4,236,804	+				-0.4
4,236,804	+				-0.1
4,236,804	+				-0.4
4,236,804	+				+0.7
4,236,804	+				-0.6
4,236,805	-				+1.7
4,236,805	-				-0.6
4,236,805	-				-0.1
4,236,805	-				-1.1
4,236,880	+		PP_3714	0.22	-0.3
4,236,880	+		PP_3714	0.22	+0.8
4,236,880	+		PP_3714	0.22	-0.8
4,236,881	-		PP_3714	0.22	-0.5
4,236,881	-		PP_3714	0.22	+0.3
4,236,949	+		PP_3714	0.46	-1.6
4,236,949	+		PP_3714	0.46	+0.5
4,236,949	+		PP_3714	0.46	-0.4
4,236,950	-		PP_3714	0.46	+0.1
4,236,950	-		PP_3714	0.46	-0.4
4,237,110	+				+0.5
4,237,111	-				+0.1
4,237,111	-				+0.0
4,237,358	-		PP_3715	0.20	+0.8
4,237,609	-		PP_3715	0.43	-0.2
4,237,645	+		PP_3715	0.46	+1.0
4,237,646	-		PP_3715	0.46	+0.2
4,237,646	-		PP_3715	0.46	-0.3
4,238,068	+		PP_3715	0.84	+3.7
4,238,075	-		PP_3715	0.84	+0.2
4,238,142	+				-0.9
4,238,223	+				-0.4
4,238,223	+				-0.4
4,238,223	+				-0.6
4,238,224	-				-0.5
4,238,224	-				-0.3
4,238,406	+				-1.6
4,238,574	+		PP_3716	0.22	-0.6
4,238,682	-		PP_3716	0.34	-0.5
4,238,688	+		PP_3716	0.35	-0.1
4,238,688	+		PP_3716	0.35	-0.6
4,238,689	-		PP_3716	0.35	+0.5
4,238,689	-		PP_3716	0.35	+1.3
4,238,689	-		PP_3716	0.35	-0.5
4,238,689	-		PP_3716	0.35	-0.2
4,238,979	+		PP_3716	0.68	-0.9
4,238,979	+		PP_3716	0.68	-1.8
4,238,980	-		PP_3716	0.68	-0.2
4,238,980	-		PP_3716	0.68	+0.2
4,238,980	-		PP_3716	0.68	+1.0
4,238,980	-		PP_3716	0.68	-0.1
4,238,980	-		PP_3716	0.68	-1.7
4,239,112	+		PP_3716	0.83	-1.2
4,239,141	+		PP_3716	0.87	+0.4