Strain Fitness in Pseudomonas putida KT2440 around PP_3043

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
3,427,165	+		PP_3042	0.55	+0.1
3,427,165	+		PP_3042	0.55	+0.1
3,427,165	+		PP_3042	0.55	-0.0
3,427,166	-		PP_3042	0.55	-0.7
3,427,166	-		PP_3042	0.55	+0.5
3,427,177	-				+0.4
3,427,436	+		PP_3042	0.68	-0.6
3,427,437	-		PP_3042	0.68	+0.0
3,427,438	+		PP_3042	0.68	+1.2
3,427,618	+		PP_3042	0.77	+0.6
3,427,627	+		PP_3042	0.77	-1.2
3,427,627	+		PP_3042	0.77	+0.1
3,427,627	+		PP_3042	0.77	+1.1
3,427,628	-		PP_3042	0.77	+0.6
3,427,798	+		PP_3042	0.86	+0.0
3,427,798	+		PP_3042	0.86	-0.1
3,427,798	+		PP_3042	0.86	-0.2
3,427,799	-		PP_3042	0.86	-1.8
3,427,816	+		PP_3042	0.87	-0.1
3,428,096	+				-1.3
3,428,096	+				-1.5
3,428,096	+				-1.5
3,428,096	+				-0.6
3,428,097	-				-0.2
3,428,098	+				-0.4
3,428,099	-				-0.3
3,428,160	-		PP_3043	0.34	+1.0
3,428,191	-		PP_3043	0.49	+1.4
3,428,274	-		PP_3043	0.89	-2.0
3,428,305	+				-1.0
3,428,305	+				-0.0
3,428,306	-				-0.5
3,428,306	-				-1.2
3,428,306	-				-0.1
3,428,306	-				+0.1
3,428,306	-				-0.3
3,428,356	+				+0.2
3,428,356	+				+1.2
3,428,357	-				-0.5
3,428,505	+		PP_3044	0.14	+1.2
3,428,506	-		PP_3044	0.14	-0.7
3,428,642	-		PP_3044	0.23	+0.6
3,428,808	+		PP_3044	0.34	-0.1
3,428,809	-		PP_3044	0.35	+0.1
3,428,839	-		PP_3044	0.37	+0.7
3,429,034	+		PP_3044	0.50	+0.3
3,429,034	+		PP_3044	0.50	-0.8
3,429,268	+		PP_3044	0.65	+0.2
3,429,268	+		PP_3044	0.65	-0.6
3,429,269	-		PP_3044	0.65	+1.0
3,429,280	-		PP_3044	0.66	-0.1