Strain Fitness in Pseudomonas putida KT2440 around PP_2882

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
3,280,487	+		PP_2880	0.75	+2.1
3,280,672	-				-0.3
3,280,676	+				+0.9
3,280,676	+				+0.6
3,280,702	+				+0.9
3,280,806	+		PP_2881	0.12	+0.0
3,280,806	+		PP_2881	0.12	+0.0
3,280,806	+		PP_2881	0.12	+0.9
3,280,807	-		PP_2881	0.12	+0.3
3,280,808	+		PP_2881	0.12	+2.0
3,280,808	+		PP_2881	0.12	-0.0
3,280,809	-		PP_2881	0.12	+0.5
3,280,809	-		PP_2881	0.12	+0.4
3,280,809	-		PP_2881	0.12	+1.0
3,280,809	-		PP_2881	0.12	+0.7
3,280,809	-		PP_2881	0.12	+0.8
3,280,809	-		PP_2881	0.12	-0.4
3,280,944	-		PP_2881	0.31	+1.2
3,280,955	+		PP_2881	0.32	+0.9
3,280,955	+		PP_2881	0.32	+0.7
3,280,957	+		PP_2881	0.33	-0.1
3,280,958	-		PP_2881	0.33	+1.1
3,281,373	+		PP_2881	0.89	+0.3
3,281,374	-		PP_2881	0.89	-0.5
3,281,374	-		PP_2881	0.89	-0.8
3,281,448	+				+0.5
3,281,448	+				+1.4
3,281,528	-				-0.1
3,281,662	+		PP_2882	0.30	+0.6
3,281,663	-		PP_2882	0.30	+0.2
3,281,663	-		PP_2882	0.30	+3.9
3,281,740	-		PP_2882	0.42	+0.8
3,281,835	-		PP_2882	0.58	+1.1
3,281,835	-		PP_2882	0.58	+0.6
3,281,949	-		PP_2882	0.76	+0.2
3,282,136	+		PP_2883	0.23	+1.0
3,282,213	-		PP_2883	0.49	-0.2
3,282,456	+		PP_2884	0.16	-0.6
3,282,456	+		PP_2884	0.16	+0.7
3,282,456	+		PP_2884	0.16	+0.2
3,282,457	-		PP_2884	0.16	+0.7
3,282,457	-		PP_2884	0.16	+0.1
3,282,457	-		PP_2884	0.16	-1.2
3,282,459	+		PP_2884	0.17	-0.7
3,282,459	+		PP_2884	0.17	+1.4
3,282,588	+		PP_2884	0.40	+0.2
3,282,588	+		PP_2884	0.40	+0.0
3,282,589	-		PP_2884	0.40	+0.7
3,282,692	+		PP_2884	0.59	-0.6
3,282,693	-		PP_2884	0.60	+0.3
3,282,696	+		PP_2884	0.60	-0.2
3,282,924	+				+1.0
3,282,940	+				-0.2
3,282,943	+				+0.4
3,282,943	+				-0.3
3,282,961	-				+0.8
3,283,086	+				-0.2
3,283,087	-				+0.3
3,283,087	-				-0.8
3,283,087	-				-0.4
3,283,087	-				-0.4