Strain Fitness in Pseudomonas putida KT2440 around PP_2580

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
2,946,749	+		PP_2579	0.56	-0.5
2,946,755	+		PP_2579	0.56	+0.6
2,946,755	+		PP_2579	0.56	-0.4
2,946,755	+		PP_2579	0.56	+0.3
2,946,799	+		PP_2579	0.59	-1.0
2,946,799	+		PP_2579	0.59	+0.0
2,946,800	-		PP_2579	0.59	-0.2
2,946,819	+		PP_2579	0.60	-1.2
2,946,819	+		PP_2579	0.60	+0.1
2,946,819	+		PP_2579	0.60	-1.3
2,946,819	+		PP_2579	0.60	+0.0
2,946,905	+		PP_2579	0.65	-0.0
2,946,938	-		PP_2579	0.67	+0.0
2,947,046	-		PP_2579	0.73	+0.5
2,947,046	-		PP_2579	0.73	-1.4
2,947,128	-		PP_2579	0.78	-0.5
2,947,244	+		PP_2579	0.84	-0.1
2,947,244	+		PP_2579	0.84	-0.1
2,947,244	+		PP_2579	0.84	+0.7
2,947,256	+		PP_2579	0.85	-0.6
2,947,257	-		PP_2579	0.85	+0.1
2,947,442	+				+1.9
2,947,442	+				-0.1
2,947,509	+				+0.8
2,947,510	-				-1.1
2,947,510	-				-0.7
2,947,510	-				-0.1
2,947,510	-				-0.0
2,947,523	+				-0.5
2,947,523	+				+0.2
2,947,523	+				-1.4
2,947,524	-				+0.4
2,947,524	-				-1.8
2,947,524	-				-0.7
2,947,524	-				+1.8
2,947,524	-				-0.0
2,947,584	-				+1.4
2,947,642	-				+0.1
2,947,642	-				+0.2
2,947,650	+				-0.1
2,947,714	-				+2.4
2,947,744	+				+2.4
2,947,744	+				-2.1
2,947,762	-		PP_2580	0.19	+0.6
2,947,762	-		PP_2580	0.19	+1.1
2,947,817	+		PP_2580	0.54	+0.5
2,947,817	+		PP_2580	0.54	-0.7
2,947,927	+				+0.2
2,947,927	+				+0.1
2,947,930	+				-0.4
2,947,930	+				-0.2
2,947,930	+				+0.2
2,947,930	+				-0.4
2,947,931	-				-1.2
2,948,284	-		PP_2581	0.48	-1.9
2,948,388	+		PP_2581	0.78	-0.4
2,948,431	-				-0.9
2,948,506	+				-0.9
2,948,507	-				-0.1
2,948,557	+		PP_2582	0.11	+0.1
2,948,745	-		PP_2582	0.43	-0.7