Strain Fitness in Pseudomonas putida KT2440 around PP_1736

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,934,760	+				+0.8
1,935,652	-				+0.2
1,935,681	+				-0.8
1,935,682	-				-0.7
1,935,682	-				-0.4
1,935,756	+				-0.6
1,935,757	-				-0.1
1,936,177	-		PP_1736	0.42	+2.5
1,936,499	+		PP_1736	0.70	-0.0
1,936,500	-		PP_1736	0.70	+0.9
1,936,500	-		PP_1736	0.70	-0.2
1,936,767	+				+0.6
1,936,767	+				+0.5
1,936,767	+				+0.1
1,936,767	+				+0.1
1,936,768	-				+0.4
1,936,768	-				-0.1
1,936,768	-				+0.0
1,936,901	+				-2.2
1,936,901	+				+0.2
1,936,901	+				+0.7
1,936,939	-				+0.2
1,936,939	-				-0.3
1,936,947	-				+0.2
1,936,970	-				-0.3
1,936,971	+				+1.7
1,936,971	+				+0.1
1,936,971	+				-0.7
1,936,971	+				+0.5
1,936,971	+				-0.2
1,936,971	+				-1.2
1,936,972	-				-1.0
1,936,972	-				+0.8
1,936,972	-				+0.4
1,936,972	-				-2.6
1,936,972	-				+2.2
1,936,972	-				+1.6
1,936,977	+				+0.1
1,936,977	+				+0.6
1,936,978	-				-0.3
1,936,992	+				+1.9
1,937,035	+		PP_1737	0.13	+0.3
1,937,036	-		PP_1737	0.13	+0.8
1,937,037	+		PP_1737	0.13	+0.4
1,937,038	-		PP_1737	0.14	-0.6
1,937,106	+		PP_1737	0.23	+0.2
1,937,106	+		PP_1737	0.23	-1.2
1,937,107	-		PP_1737	0.23	-1.4
1,937,130	+		PP_1737	0.26	+0.4
1,937,131	-		PP_1737	0.26	+0.3
1,937,174	+		PP_1737	0.32	-0.0
1,937,175	-		PP_1737	0.32	+3.3
1,937,214	+		PP_1737	0.37	-1.7
1,937,214	+		PP_1737	0.37	-0.8
1,937,215	-		PP_1737	0.37	-0.2
1,937,215	-		PP_1737	0.37	+0.0
1,937,215	-		PP_1737	0.37	+1.2
1,937,215	-		PP_1737	0.37	+1.8
1,937,215	-		PP_1737	0.37	-0.2
1,937,442	+		PP_1737	0.68	-0.0
1,937,442	+		PP_1737	0.68	-0.2
1,937,442	+		PP_1737	0.68	-0.8
1,937,442	+		PP_1737	0.68	+1.8
1,937,442	+		PP_1737	0.68	-0.3
1,937,442	+		PP_1737	0.68	+0.4
1,937,442	+		PP_1737	0.68	-0.5
1,937,442	+		PP_1737	0.68	+1.0
1,937,442	+		PP_1737	0.68	-1.1
1,937,443	-		PP_1737	0.68	-0.3
1,937,443	-		PP_1737	0.68	+0.7
1,937,443	-		PP_1737	0.68	+0.2
1,937,443	-		PP_1737	0.68	+0.1
1,937,443	-		PP_1737	0.68	+0.2
1,937,443	-		PP_1737	0.68	-0.6
1,937,443	-		PP_1737	0.68	+0.8
1,937,490	+		PP_1737	0.74	-1.4
1,937,490	+		PP_1737	0.74	-0.0
1,937,491	-		PP_1737	0.74	+0.1
1,937,491	-		PP_1737	0.74	-0.1
1,937,503	-		PP_1737	0.76	+1.0
1,937,535	+		PP_1737	0.80	-0.8
1,937,801	-				+0.5
1,937,801	-				-0.3
1,937,801	-				+0.8
1,937,801	-				-0.2
1,937,834	-				-0.2