Strain Fitness in Pseudomonas putida KT2440 around PP_1650

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,841,186	-		PP_1649	0.21	+0.7
1,841,382	+		PP_1649	0.40	+0.1
1,841,447	-		PP_1649	0.46	+1.0
1,841,593	+		PP_1649	0.60	+0.3
1,841,728	+		PP_1649	0.73	-0.5
1,841,933	-				-0.3
1,842,163	+				+1.6
1,842,164	-				+1.8
1,842,183	-				+1.7
1,842,183	-				+1.6
1,842,208	+				+1.4
1,842,208	+				+1.7
1,842,208	+				+0.9
1,842,209	-				+1.7
1,842,209	-				+1.8
1,842,256	+				+1.1
1,842,256	+				+1.7
1,842,362	-		PP_1650	0.12	+2.3
1,842,486	-		PP_1650	0.16	+1.9
1,842,682	+		PP_1650	0.23	+1.8
1,842,683	-		PP_1650	0.23	+1.6
1,842,712	+		PP_1650	0.24	+1.2
1,842,745	+		PP_1650	0.26	+1.2
1,842,923	+		PP_1650	0.32	+1.7
1,842,923	+		PP_1650	0.32	+1.7
1,842,923	+		PP_1650	0.32	+1.7
1,842,933	-		PP_1650	0.32	+1.6
1,842,965	-		PP_1650	0.34	+0.0
1,842,965	-		PP_1650	0.34	+1.6
1,843,001	+		PP_1650	0.35	+1.4
1,843,001	+		PP_1650	0.35	+1.7
1,843,002	-		PP_1650	0.35	+1.6
1,843,112	+		PP_1650	0.39	+1.2
1,843,112	+		PP_1650	0.39	+1.5
1,843,606	+		PP_1650	0.57	+1.7
1,843,607	-		PP_1650	0.57	+1.6
1,843,631	+		PP_1650	0.58	+1.6
1,843,632	-		PP_1650	0.58	+1.7
1,843,632	-		PP_1650	0.58	+1.9
1,843,723	+		PP_1650	0.61	+1.6
1,843,723	+		PP_1650	0.61	+1.8
1,843,723	+		PP_1650	0.61	+1.6
1,843,827	-		PP_1650	0.65	+1.6
1,843,827	-		PP_1650	0.65	+1.3
1,844,335	+		PP_1650	0.83	+0.9
1,844,708	+				+1.8
1,844,708	+				+1.4
1,844,708	+				+1.7
1,844,708	+				+1.5
1,844,709	-				+1.6
1,844,709	-				+1.7
1,844,712	+				+1.5
1,844,713	-				+1.7
1,844,713	-				+1.6
1,844,852	+				+1.0
1,844,852	+				+1.4
1,844,853	-				-0.9
1,844,882	+				+0.8
1,844,882	+				+0.4
1,844,882	+				+0.1
1,844,882	+				+0.0
1,844,882	+				+0.6
1,844,883	-				-0.5
1,844,883	-				-0.0
1,844,883	-				+0.0
1,844,883	-				+0.3
1,844,883	-				+0.3
1,844,885	+				+0.5
1,844,885	+				-0.4
1,844,885	+				+2.1
1,844,892	+				+0.8
1,844,893	-				+0.6
1,844,953	+				+0.7
1,845,053	+		PP_1651	0.14	+1.3
1,845,054	-		PP_1651	0.14	+0.7
1,845,054	-		PP_1651	0.14	+0.0
1,845,147	-		PP_1651	0.27	+0.2
1,845,268	+		PP_1651	0.42	+0.6
1,845,268	+		PP_1651	0.42	-0.1
1,845,299	+		PP_1651	0.46	-1.0
1,845,299	+		PP_1651	0.46	+0.6
1,845,300	-		PP_1651	0.47	+0.3
1,845,546	-		PP_1651	0.79	+0.1
1,845,569	+		PP_1651	0.82	+0.9
1,845,586	+		PP_1651	0.84	-1.1
1,845,677	+				-0.2
1,845,677	+				-0.1
1,845,677	+				+0.0
1,845,678	-				-1.7
1,845,788	+				-0.3
1,845,788	+				-0.1
1,845,788	+				-0.2
1,845,788	+				+0.4
1,845,789	-				-0.8
1,845,789	-				+0.5
1,845,790	+				+0.3
1,845,790	+				+0.0