Strain Fitness in Pseudomonas putida KT2440 around PP_1153

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,318,794	+				+0.4
1,318,794	+				-0.9
1,318,794	+				+1.4
1,318,795	-				-0.4
1,318,795	-				+0.0
1,318,795	-				-1.6
1,318,795	-				+1.7
1,318,795	-				+0.4
1,318,855	+				-1.0
1,318,856	-				+0.0
1,318,858	+				-0.3
1,318,858	+				+1.0
1,318,858	+				-0.8
1,318,858	+				-0.5
1,318,858	+				-0.1
1,318,858	+				+0.6
1,318,858	+				+1.0
1,318,859	-				+1.1
1,318,859	-				+0.5
1,318,859	-				+2.0
1,318,859	-				+2.0
1,318,859	-				+0.3
1,318,859	-				-0.5
1,318,859	-				+0.1
1,318,859	-				-1.3
1,318,859	-				-1.3
1,318,859	-				+0.7
1,318,859	-				+0.7
1,318,859	-				+1.1
1,318,995	+		PP_1152	0.25	+1.4
1,318,995	+		PP_1152	0.25	+0.0
1,318,995	+		PP_1152	0.25	+1.1
1,318,995	+		PP_1152	0.25	-0.1
1,319,256	+		PP_1152	0.55	+0.3
1,319,256	+		PP_1152	0.55	-0.5
1,319,256	+		PP_1152	0.55	+0.7
1,319,257	-		PP_1152	0.55	-0.2
1,319,257	-		PP_1152	0.55	+0.5
1,319,287	+		PP_1152	0.59	+0.6
1,319,287	+				+0.4
1,319,288	-		PP_1152	0.59	-0.4
1,319,288	-		PP_1152	0.59	+0.7
1,319,288	-		PP_1152	0.59	+0.4
1,319,338	+		PP_1152	0.64	-1.5
1,319,338	+		PP_1152	0.64	-0.0
1,319,338	+		PP_1152	0.64	-0.2
1,319,339	-		PP_1152	0.65	+0.3
1,319,339	-		PP_1152	0.65	-0.0
1,319,339	-		PP_1152	0.65	-0.7
1,319,339	-		PP_1152	0.65	+0.2
1,319,339	-		PP_1152	0.65	+0.1
1,319,339	-		PP_1152	0.65	-0.1
1,319,546	+		PP_1152	0.88	+2.0
1,319,706	+				+0.1
1,319,707	-				+0.1
1,319,707	-				+0.1
1,319,762	+				+0.6
1,319,762	+				+0.5
1,319,787	-				+1.6
1,319,835	+		PP_1153	0.13	+1.2
1,319,926	+		PP_1153	0.40	+0.2
1,319,927	-		PP_1153	0.40	+0.2
1,319,927	-		PP_1153	0.40	+2.5
1,320,146	+				+1.0
1,320,147	-				-0.3
1,320,225	-				+0.1
1,320,227	+				-0.5
1,320,227	+				+0.1
1,320,227	+				+0.5
1,320,228	-				-0.1
1,320,426	+		PP_1154	0.11	-0.4
1,320,426	+		PP_1154	0.11	+0.9
1,320,427	-		PP_1154	0.11	+0.4
1,320,487	+		PP_1154	0.13	-0.0
1,320,514	+		PP_1154	0.14	-0.1
1,320,515	-		PP_1154	0.14	-1.7
1,320,864	-		PP_1154	0.28	-0.3
1,320,864	-		PP_1154	0.28	+0.5
1,320,995	+		PP_1154	0.33	+0.3