Strain Fitness in Pseudomonas putida KT2440 around PP_0886

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,028,165	-		PP_0885	0.65	-0.2
1,028,325	-		PP_0885	0.74	+0.4
1,028,325	-		PP_0885	0.74	+0.0
1,028,343	-		PP_0885	0.76	+0.5
1,028,433	-		PP_0885	0.81	+0.4
1,028,477	+		PP_0885	0.84	-0.4
1,028,477	+		PP_0885	0.84	+1.6
1,028,477	+		PP_0885	0.84	-0.4
1,028,478	-		PP_0885	0.84	-1.1
1,028,609	+				-0.5
1,028,610	-				+0.5
1,028,610	-				+0.1
1,028,798	-				-0.1
1,028,798	-				-0.6
1,028,798	-				-2.3
1,028,801	+				-1.2
1,028,801	+				+0.3
1,028,801	+				-0.2
1,028,801	+				-1.3
1,028,801	+				-1.9
1,028,801	+				-0.2
1,028,802	-				+0.2
1,028,802	-				+0.1
1,028,830	+				-0.5
1,028,831	-				+0.8
1,028,831	-				-1.3
1,028,831	-				-0.3
1,028,838	+				+1.6
1,028,839	-				-0.9
1,028,839	-				+2.1
1,028,888	+				+0.2
1,028,949	+				+0.3
1,028,950	-				-0.2
1,028,950	-				+0.9
1,028,966	-				+0.7
1,028,978	-				-0.1
1,029,004	+				+0.9
1,029,029	-				-0.8
1,029,122	-				+0.2
1,029,185	+				+0.3
1,029,299	-		PP_0886	0.25	-0.0
1,029,299	-		PP_0886	0.25	-0.1
1,029,455	+		PP_0886	0.47	+1.3
1,029,679	+		PP_0886	0.78	+1.5
1,029,680	-		PP_0886	0.78	-0.1
1,029,841	+				-0.6
1,029,841	+				-0.5
1,029,842	-				+1.3
1,029,842	-				-0.0
1,029,896	+				+0.7
1,029,896	+				-0.2
1,029,897	-				+0.5
1,029,913	+				+0.6
1,029,914	-				+0.4
1,029,998	+				+0.1
1,029,998	+				-0.2
1,029,999	-				-0.4
1,029,999	-				-1.3
1,030,147	+		PP_0887	0.15	-0.3
1,030,318	+		PP_0887	0.28	+0.1
1,030,318	+		PP_0887	0.28	-1.8
1,030,318	+		PP_0887	0.28	-1.0
1,030,318	+		PP_0887	0.28	+0.1
1,030,318	+		PP_0887	0.28	-0.6
1,030,319	-		PP_0887	0.28	-1.2
1,030,319	-		PP_0887	0.28	-2.1
1,030,319	-		PP_0887	0.28	-1.2
1,030,319	-		PP_0887	0.28	-0.9
1,030,319	-		PP_0887	0.28	-0.3
1,030,354	+		PP_0887	0.30	-1.3
1,030,354	+		PP_0887	0.30	-0.8
1,030,355	-		PP_0887	0.30	+0.5
1,030,357	+		PP_0887	0.31	+0.2
1,030,357	+		PP_0887	0.31	+0.2
1,030,358	-		PP_0887	0.31	-0.9
1,030,358	-		PP_0887	0.31	+0.7
1,030,439	-		PP_0887	0.37	+0.0
1,030,507	+		PP_0887	0.42	+1.0
1,030,507	+		PP_0887	0.42	+1.0
1,030,508	-		PP_0887	0.42	-0.1
1,030,785	-		PP_0887	0.62	-1.1
1,030,785	-		PP_0887	0.62	-1.2
1,030,785	-		PP_0887	0.62	-1.5