Strain Fitness in Pseudomonas putida KT2440 around PP_0865

Experiment: D-Glucose (C) pH 7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 7
1,002,560	+		PP_0864	0.63	+0.1
1,002,560	+		PP_0864	0.63	+0.4
1,002,568	+		PP_0864	0.64	-0.2
1,002,631	+		PP_0864	0.69	-0.1
1,002,631	+		PP_0864	0.69	-0.0
1,002,632	-		PP_0864	0.70	+0.8
1,002,652	+		PP_0864	0.71	-1.3
1,002,652	+		PP_0864	0.71	+0.7
1,002,652	+		PP_0864	0.71	+0.9
1,002,653	-		PP_0864	0.71	+0.1
1,002,653	-		PP_0864	0.71	-1.1
1,002,653	-		PP_0864	0.71	-0.2
1,002,658	+		PP_0864	0.72	+0.8
1,002,658	+		PP_0864	0.72	-1.6
1,002,667	+		PP_0864	0.73	+0.4
1,002,694	+		PP_0864	0.75	+0.3
1,002,745	+				+0.6
1,002,826	+		PP_0864	0.86	+0.4
1,002,827	-		PP_0864	0.86	-0.2
1,002,827	-		PP_0864	0.86	-0.2
1,002,829	+		PP_0864	0.86	-1.0
1,002,830	-		PP_0864	0.87	+0.2
1,002,868	+		PP_0864	0.90	-1.7
1,002,869	-		PP_0864	0.90	-1.2
1,002,869	-		PP_0864	0.90	+0.3
1,002,900	+				+0.4
1,002,900	+				-0.9
1,002,901	-				-0.2
1,002,964	+				-1.0
1,002,965	-				+0.6
1,003,018	+				+0.1
1,003,018	+				+0.7
1,003,073	+				+0.6
1,003,074	-				-0.1
1,003,123	-				+0.4
1,003,355	+				-0.4
1,003,355	+				-0.1
1,003,356	-				-0.2
1,003,356	-				+0.6
1,003,360	-				-0.6
1,003,386	+				-0.5
1,003,387	-				-1.0
1,003,468	-				-0.6
1,003,524	+				-1.0
1,003,525	-				-0.5
1,003,525	-				-0.1
1,003,674	-		PP_0865	0.37	-0.3
1,003,674	-		PP_0865	0.37	+0.3
1,003,770	+		PP_0865	0.57	+1.1
1,003,770	+		PP_0865	0.57	+1.0
1,003,770	+		PP_0865	0.57	+0.9
1,003,771	-		PP_0865	0.57	+0.8
1,003,927	-		PP_0865	0.89	+0.5
1,003,927	-		PP_0865	0.89	-0.9
1,003,928	+		PP_0865	0.89	+0.7
1,003,928	+		PP_0865	0.89	+0.1
1,003,929	-		PP_0865	0.90	+0.9
1,003,929	-		PP_0865	0.90	+0.0
1,004,138	+		PP_0866	0.16	-0.0
1,004,138	+		PP_0866	0.16	+0.6
1,004,138	+		PP_0866	0.16	+0.8
1,004,497	+		PP_0866	0.53	+0.7
1,004,668	+		PP_0866	0.70	-0.4
1,004,668	+		PP_0866	0.70	-0.5
1,004,668	+		PP_0866	0.70	+0.8
1,004,668	+		PP_0866	0.70	+1.1
1,004,669	-		PP_0866	0.70	-0.0
1,004,669	-		PP_0866	0.70	-0.5
1,004,670	+		PP_0866	0.70	+0.1
1,004,670	+		PP_0866	0.70	-1.9
1,004,670	+		PP_0866	0.70	-0.2
1,004,670	+		PP_0866	0.70	-0.6
1,004,670	+		PP_0866	0.70	-1.9
1,004,670	+		PP_0866	0.70	-0.0
1,004,670	+		PP_0866	0.70	-0.0
1,004,670	+		PP_0866	0.70	-1.0
1,004,670	+		PP_0866	0.70	-1.0
1,004,670	+		PP_0866	0.70	-0.9
1,004,670	+		PP_0866	0.70	+0.1
1,004,671	-		PP_0866	0.70	-0.6
1,004,671	-		PP_0866	0.70	+0.9
1,004,671	-		PP_0866	0.70	-0.0
1,004,671	-		PP_0866	0.70	+0.3
1,004,671	-		PP_0866	0.70	-0.1
1,004,671	-		PP_0866	0.70	+0.2
1,004,671	-		PP_0866	0.70	-1.9
1,004,671	-		PP_0866	0.70	+0.3
1,004,671	-		PP_0866	0.70	+0.2
1,004,671	-		PP_0866	0.70	+0.1
1,004,699	+		PP_0866	0.73	-0.4
1,004,700	-		PP_0866	0.73	+0.3
1,004,775	+		PP_0866	0.81	+1.2
1,004,775	+		PP_0866	0.81	+0.2
1,004,776	-		PP_0866	0.81	+0.3
1,004,776	-		PP_0866	0.81	-0.2
1,004,776	-		PP_0866	0.81	-0.5
1,004,863	+		PP_0866	0.90	+0.1
1,004,872	+				-0.2
1,004,872	+				+0.1
1,004,949	+				+1.6