Strain Fitness in Pseudomonas putida KT2440 around PP_0593

Experiment: D-Glucose (C) pH 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0592 and PP_0593 are separated by 368 nucleotidesPP_0593 and PP_0594 are separated by 9 nucleotidesPP_0594 and PP_0595 are separated by 9 nucleotides PP_0592: PP_0592 - Oxidoreductase, short chain dehydrogenase/reductase family, at 690,722 to 691,408 _0592 PP_0593: PP_0593 - putative ribosome-binding factor, at 691,777 to 692,361 _0593 PP_0594: PP_0594 - Transcriptional regulator, TetR family, at 692,371 to 693,114 _0594 PP_0595: PP_0595 - Transcriptional regulator, LysR family, at 693,124 to 694,041 _0595 Position (kb) 691 692 693Strain fitness (log2 ratio) -1 0 1 2 3at 690.960 kb on + strand, within PP_0592at 690.960 kb on + strand, within PP_0592at 690.960 kb on + strand, within PP_0592at 690.961 kb on - strand, within PP_0592at 690.961 kb on - strand, within PP_0592at 691.044 kb on - strand, within PP_0592at 691.124 kb on + strand, within PP_0592at 691.175 kb on + strand, within PP_0592at 691.176 kb on - strand, within PP_0592at 691.176 kb on - strand, within PP_0592at 691.176 kb on - strand, within PP_0592at 691.402 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.450 kb on + strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.451 kb on - strandat 691.465 kb on - strandat 691.465 kb on - strandat 691.575 kb on + strandat 691.575 kb on + strandat 691.576 kb on - strandat 691.576 kb on - strandat 691.576 kb on - strandat 691.576 kb on - strandat 691.631 kb on + strandat 691.631 kb on + strandat 691.632 kb on - strandat 691.654 kb on + strandat 691.682 kb on + strandat 691.714 kb on + strandat 691.740 kb on + strandat 691.797 kb on + strandat 691.798 kb on - strandat 691.798 kb on - strandat 691.798 kb on - strandat 691.798 kb on - strandat 692.039 kb on + strand, within PP_0593at 692.331 kb on - strandat 692.352 kb on + strandat 692.352 kb on + strandat 692.352 kb on + strandat 692.353 kb on - strandat 692.353 kb on - strandat 692.361 kb on + strandat 692.361 kb on + strandat 692.362 kb on - strandat 692.362 kb on - strandat 692.362 kb on - strandat 692.415 kb on + strandat 692.415 kb on + strandat 692.416 kb on - strandat 692.502 kb on - strand, within PP_0594at 692.540 kb on - strand, within PP_0594at 692.540 kb on - strand, within PP_0594at 692.587 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.633 kb on + strand, within PP_0594at 692.729 kb on + strand, within PP_0594at 692.729 kb on + strand, within PP_0594at 692.730 kb on - strand, within PP_0594at 692.730 kb on - strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.822 kb on + strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.823 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.847 kb on - strand, within PP_0594at 692.849 kb on + strand, within PP_0594at 692.849 kb on + strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.850 kb on - strand, within PP_0594at 692.859 kb on + strand, within PP_0594at 692.860 kb on - strand, within PP_0594at 692.931 kb on - strand, within PP_0594at 692.950 kb on - strand, within PP_0594at 692.976 kb on + strand, within PP_0594at 693.025 kb on + strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.026 kb on - strand, within PP_0594at 693.027 kb on - strand, within PP_0594at 693.078 kb on + strandat 693.079 kb on - strandat 693.276 kb on - strand, within PP_0595at 693.276 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.291 kb on - strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.297 kb on + strand, within PP_0595at 693.298 kb on - strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.299 kb on + strand, within PP_0595at 693.300 kb on - strand, within PP_0595at 693.309 kb on + strand, within PP_0595

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) pH 7
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690,960 + PP_0592 0.35 -0.5
690,960 + PP_0592 0.35 -0.3
690,960 + PP_0592 0.35 +0.6
690,961 - PP_0592 0.35 -0.2
690,961 - PP_0592 0.35 -0.8
691,044 - PP_0592 0.47 -0.1
691,124 + PP_0592 0.59 +0.4
691,175 + PP_0592 0.66 +0.0
691,176 - PP_0592 0.66 -0.8
691,176 - PP_0592 0.66 -0.8
691,176 - PP_0592 0.66 -0.9
691,402 + +0.2
691,450 + -0.2
691,450 + +0.2
691,450 + +0.4
691,450 + +0.7
691,450 + +0.9
691,450 + -0.3
691,451 - -0.0
691,451 - +0.2
691,451 - -0.1
691,451 - +2.8
691,451 - -0.6
691,465 - +0.2
691,465 - -1.1
691,575 + -0.3
691,575 + +0.1
691,576 - -0.2
691,576 - -1.2
691,576 - -0.8
691,576 - +1.1
691,631 + +0.1
691,631 + +0.1
691,632 - +0.3
691,654 + -0.1
691,682 + +0.3
691,714 + -0.3
691,740 + -0.8
691,797 + +2.8
691,798 - +2.2
691,798 - -0.2
691,798 - -0.2
691,798 - -1.0
692,039 + PP_0593 0.45 +1.5
692,331 - +0.2
692,352 + -0.6
692,352 + +0.4
692,352 + +0.1
692,353 - +0.4
692,353 - -0.1
692,361 + -0.7
692,361 + +1.1
692,362 - +0.6
692,362 - +0.2
692,362 - +0.8
692,415 + +0.6
692,415 + -0.8
692,416 - +0.2
692,502 - PP_0594 0.18 +0.7
692,540 - PP_0594 0.23 -0.2
692,540 - PP_0594 0.23 +0.3
692,587 + PP_0594 0.29 -0.4
692,633 + PP_0594 0.35 +0.8
692,633 + PP_0594 0.35 -1.3
692,633 + PP_0594 0.35 -0.7
692,729 + PP_0594 0.48 +0.7
692,729 + PP_0594 0.48 -1.0
692,730 - PP_0594 0.48 +1.1
692,730 - PP_0594 0.48 +0.8
692,822 + PP_0594 0.61 +0.1
692,822 + PP_0594 0.61 +1.2
692,822 + PP_0594 0.61 +0.5
692,823 - PP_0594 0.61 -0.7
692,823 - PP_0594 0.61 +0.8
692,823 - PP_0594 0.61 +0.2
692,847 - PP_0594 0.64 -0.9
692,847 - PP_0594 0.64 +0.3
692,847 - PP_0594 0.64 -0.2
692,849 + PP_0594 0.64 +1.4
692,849 + PP_0594 0.64 +0.0
692,850 - PP_0594 0.64 +0.1
692,850 - PP_0594 0.64 -0.1
692,850 - PP_0594 0.64 +1.4
692,850 - PP_0594 0.64 -0.7
692,859 + PP_0594 0.66 +0.6
692,860 - PP_0594 0.66 +1.2
692,931 - PP_0594 0.75 +0.1
692,950 - PP_0594 0.78 +0.4
692,976 + PP_0594 0.81 +0.4
693,025 + PP_0594 0.88 +0.3
693,026 - PP_0594 0.88 +0.6
693,026 - PP_0594 0.88 +0.4
693,026 - PP_0594 0.88 +0.0
693,027 - PP_0594 0.88 +0.1
693,078 + -1.5
693,079 - +1.8
693,276 - PP_0595 0.17 +0.7
693,276 - PP_0595 0.17 -0.5
693,291 - PP_0595 0.18 +1.2
693,291 - PP_0595 0.18 -1.3
693,297 + PP_0595 0.19 +0.7
693,297 + PP_0595 0.19 +0.1
693,297 + PP_0595 0.19 +0.9
693,298 - PP_0595 0.19 -0.7
693,299 + PP_0595 0.19 +2.7
693,299 + PP_0595 0.19 +0.4
693,299 + PP_0595 0.19 +0.2
693,299 + PP_0595 0.19 +0.5
693,299 + PP_0595 0.19 +0.7
693,299 + PP_0595 0.19 -0.5
693,300 - PP_0595 0.19 +0.4
693,309 + PP_0595 0.20 +0.1

Or see this region's nucleotide sequence