Experiment: Valerolactone (C) pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4583 and PP_4584 are separated by 459 nucleotides PP_4584 and PP_4585 are separated by 71 nucleotides PP_4585 and PP_4586 are separated by 114 nucleotides
PP_4583: PP_4583 - putative Peptidase, at 5,201,694 to 5,203,736
_4583
PP_4584: PP_4584 - putative endonuclease, at 5,204,196 to 5,204,567
_4584
PP_4585: PP_4585 - RNA methyltransferase, TrmH family, at 5,204,639 to 5,205,109
_4585
PP_4586: PP_4586 - conserved exported protein of unknown function, at 5,205,224 to 5,206,432
_4586
Position (kb) 5204
5205 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5203.425 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.461 kb on + strand, within PP_4583 at 5203.479 kb on + strand, within PP_4583 at 5203.479 kb on + strand, within PP_4583 at 5203.480 kb on - strand, within PP_4583 at 5203.560 kb on + strand at 5203.702 kb on - strand at 5203.728 kb on - strand at 5203.739 kb on + strand at 5203.739 kb on + strand at 5203.904 kb on - strand at 5203.904 kb on - strand at 5203.904 kb on - strand at 5203.919 kb on + strand at 5203.919 kb on + strand at 5203.920 kb on - strand at 5203.929 kb on + strand at 5203.939 kb on + strand at 5203.952 kb on + strand at 5203.952 kb on + strand at 5203.982 kb on + strand at 5203.983 kb on - strand at 5204.097 kb on + strand at 5204.098 kb on - strand at 5204.159 kb on + strand at 5204.159 kb on + strand at 5204.302 kb on - strand, within PP_4584 at 5204.302 kb on - strand, within PP_4584 at 5204.433 kb on + strand, within PP_4584 at 5204.433 kb on + strand, within PP_4584 at 5204.460 kb on + strand, within PP_4584 at 5204.475 kb on + strand, within PP_4584 at 5204.519 kb on + strand, within PP_4584 at 5204.519 kb on + strand, within PP_4584 at 5204.604 kb on + strand at 5204.604 kb on + strand at 5204.605 kb on - strand at 5204.606 kb on + strand at 5204.654 kb on + strand at 5204.726 kb on + strand, within PP_4585 at 5204.726 kb on + strand, within PP_4585 at 5204.726 kb on + strand, within PP_4585 at 5204.727 kb on - strand, within PP_4585 at 5204.747 kb on + strand, within PP_4585 at 5204.747 kb on + strand, within PP_4585 at 5204.748 kb on - strand, within PP_4585 at 5204.762 kb on + strand, within PP_4585 at 5204.763 kb on - strand, within PP_4585 at 5204.763 kb on - strand, within PP_4585 at 5204.807 kb on + strand, within PP_4585 at 5204.807 kb on + strand, within PP_4585 at 5204.808 kb on - strand, within PP_4585 at 5204.887 kb on - strand, within PP_4585 at 5204.887 kb on - strand, within PP_4585 at 5204.912 kb on + strand, within PP_4585 at 5204.912 kb on + strand, within PP_4585 at 5204.912 kb on + strand, within PP_4585 at 5204.932 kb on + strand, within PP_4585 at 5204.933 kb on - strand, within PP_4585 at 5204.936 kb on + strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.937 kb on - strand, within PP_4585 at 5204.998 kb on + strand, within PP_4585 at 5204.998 kb on + strand, within PP_4585 at 5204.998 kb on + strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5204.999 kb on - strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.002 kb on + strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.003 kb on - strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.056 kb on + strand, within PP_4585 at 5205.057 kb on - strand, within PP_4585 at 5205.083 kb on - strand at 5205.108 kb on - strand at 5205.176 kb on + strand at 5205.176 kb on + strand at 5205.225 kb on + strand at 5205.335 kb on + strand at 5205.335 kb on + strand at 5205.335 kb on + strand at 5205.336 kb on - strand at 5205.336 kb on - strand at 5205.336 kb on - strand at 5205.336 kb on - strand at 5205.530 kb on + strand, within PP_4586 at 5205.546 kb on + strand, within PP_4586 at 5205.549 kb on + strand, within PP_4586 at 5205.550 kb on - strand, within PP_4586 at 5205.567 kb on - strand, within PP_4586
Per-strain Table
Position Strand Gene LocusTag Fraction Valerolactone (C) pH 6.5 remove 5,203,425 + PP_4583 0.85 +0.2 5,203,461 + PP_4583 0.86 -0.9 5,203,461 + PP_4583 0.86 -0.7 5,203,461 + PP_4583 0.86 +1.4 5,203,461 + PP_4583 0.86 +0.2 5,203,461 + PP_4583 0.86 +1.3 5,203,479 + PP_4583 0.87 -0.4 5,203,479 + PP_4583 0.87 +1.4 5,203,480 - PP_4583 0.87 +1.0 5,203,560 + -0.5 5,203,702 - -0.3 5,203,728 - +1.7 5,203,739 + +2.4 5,203,739 + +1.1 5,203,904 - +0.0 5,203,904 - +1.4 5,203,904 - +0.0 5,203,919 + +0.1 5,203,919 + +0.3 5,203,920 - +0.4 5,203,929 + +0.1 5,203,939 + -0.6 5,203,952 + +0.0 5,203,952 + +1.6 5,203,982 + +0.4 5,203,983 - -0.5 5,204,097 + -0.3 5,204,098 - +1.1 5,204,159 + -0.1 5,204,159 + -0.4 5,204,302 - PP_4584 0.28 -0.7 5,204,302 - PP_4584 0.28 -0.0 5,204,433 + PP_4584 0.64 +0.8 5,204,433 + PP_4584 0.64 +1.2 5,204,460 + PP_4584 0.71 +0.7 5,204,475 + PP_4584 0.75 +1.3 5,204,519 + PP_4584 0.87 -0.5 5,204,519 + PP_4584 0.87 +0.7 5,204,604 + -0.8 5,204,604 + -0.8 5,204,605 - -0.8 5,204,606 + -0.0 5,204,654 + -0.7 5,204,726 + PP_4585 0.18 -0.3 5,204,726 + PP_4585 0.18 +0.6 5,204,726 + PP_4585 0.18 +1.3 5,204,727 - PP_4585 0.19 -1.1 5,204,747 + PP_4585 0.23 +1.8 5,204,747 + PP_4585 0.23 -0.2 5,204,748 - PP_4585 0.23 +0.3 5,204,762 + PP_4585 0.26 +3.4 5,204,763 - PP_4585 0.26 +0.1 5,204,763 - PP_4585 0.26 -0.7 5,204,807 + PP_4585 0.36 -1.1 5,204,807 + PP_4585 0.36 +0.6 5,204,808 - PP_4585 0.36 -0.1 5,204,887 - PP_4585 0.53 -1.4 5,204,887 - PP_4585 0.53 -0.2 5,204,912 + PP_4585 0.58 +0.8 5,204,912 + PP_4585 0.58 +0.6 5,204,912 + PP_4585 0.58 -0.9 5,204,932 + PP_4585 0.62 -1.4 5,204,933 - PP_4585 0.62 -1.3 5,204,936 + PP_4585 0.63 -1.0 5,204,937 - PP_4585 0.63 +0.3 5,204,937 - PP_4585 0.63 -1.1 5,204,937 - PP_4585 0.63 +0.2 5,204,937 - PP_4585 0.63 -0.2 5,204,998 + PP_4585 0.76 -0.3 5,204,998 + PP_4585 0.76 +1.2 5,204,998 + PP_4585 0.76 -1.3 5,204,999 - PP_4585 0.76 +0.1 5,204,999 - PP_4585 0.76 +0.8 5,204,999 - PP_4585 0.76 -1.3 5,204,999 - PP_4585 0.76 +0.9 5,204,999 - PP_4585 0.76 -1.0 5,205,002 + PP_4585 0.77 +0.3 5,205,002 + PP_4585 0.77 -0.7 5,205,002 + PP_4585 0.77 +1.8 5,205,002 + PP_4585 0.77 -2.2 5,205,002 + PP_4585 0.77 +3.4 5,205,003 - PP_4585 0.77 -0.9 5,205,003 - PP_4585 0.77 +2.1 5,205,003 - PP_4585 0.77 -0.3 5,205,003 - PP_4585 0.77 -0.3 5,205,003 - PP_4585 0.77 +0.8 5,205,003 - PP_4585 0.77 +1.3 5,205,056 + PP_4585 0.89 -0.5 5,205,056 + PP_4585 0.89 +0.1 5,205,056 + PP_4585 0.89 -1.0 5,205,056 + PP_4585 0.89 +1.6 5,205,056 + PP_4585 0.89 -0.9 5,205,057 - PP_4585 0.89 -0.4 5,205,083 - -0.5 5,205,108 - -0.8 5,205,176 + -1.4 5,205,176 + +0.1 5,205,225 + -0.7 5,205,335 + -0.2 5,205,335 + -0.8 5,205,335 + +0.8 5,205,336 - -0.7 5,205,336 - -0.4 5,205,336 - +0.0 5,205,336 - -0.6 5,205,530 + PP_4586 0.25 +1.4 5,205,546 + PP_4586 0.27 -0.9 5,205,549 + PP_4586 0.27 +1.5 5,205,550 - PP_4586 0.27 -0.3 5,205,567 - PP_4586 0.28 -0.6
Or see this region's nucleotide sequence