Strain Fitness in Pseudomonas putida KT2440 around PP_1880

Experiment: Valerolactone (C) pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Valerolactone (C) pH 6.5
2,104,019	-		PP_1879	0.43	+1.2
2,104,019	-		PP_1879	0.43	-1.1
2,104,019	-		PP_1879	0.43	-0.8
2,104,144	+		PP_1879	0.51	+0.7
2,104,224	+		PP_1879	0.56	+1.2
2,104,304	-		PP_1879	0.62	-1.9
2,104,387	+		PP_1879	0.67	+2.0
2,104,388	-		PP_1879	0.67	+1.0
2,104,417	+		PP_1879	0.69	-0.6
2,104,417	+		PP_1879	0.69	-1.5
2,104,418	-		PP_1879	0.69	+0.4
2,104,432	-		PP_1879	0.70	+0.3
2,104,432	-		PP_1879	0.70	-0.7
2,104,474	+		PP_1879	0.73	+0.0
2,104,474	+		PP_1879	0.73	-0.6
2,104,474	+		PP_1879	0.73	+0.0
2,104,474	+		PP_1879	0.73	-0.1
2,104,474	+		PP_1879	0.73	+0.8
2,104,474	+		PP_1879	0.73	+0.2
2,104,475	-		PP_1879	0.73	+0.6
2,104,475	-		PP_1879	0.73	-0.1
2,104,475	-		PP_1879	0.73	+1.1
2,104,475	-		PP_1879	0.73	+0.4
2,104,478	+		PP_1879	0.73	-1.2
2,104,478	+		PP_1879	0.73	+0.3
2,104,513	+		PP_1879	0.76	-0.2
2,104,513	+		PP_1879	0.76	+0.3
2,104,514	-		PP_1879	0.76	-0.9
2,104,514	-		PP_1879	0.76	+0.4
2,104,514	-		PP_1879	0.76	-0.3
2,104,528	+		PP_1879	0.77	+1.5
2,104,529	-		PP_1879	0.77	-0.1
2,104,553	+		PP_1879	0.78	-1.5
2,104,554	-		PP_1879	0.78	+1.1
2,104,554	-		PP_1879	0.78	-0.5
2,104,554	-		PP_1879	0.78	+0.7
2,104,554	-		PP_1879	0.78	-0.8
2,104,554	-		PP_1879	0.78	+0.4
2,104,575	+		PP_1879	0.80	-0.3
2,104,575	+		PP_1879	0.80	-0.2
2,104,576	-		PP_1879	0.80	-0.5
2,104,581	+		PP_1879	0.80	+0.0
2,104,581	+		PP_1879	0.80	+0.5
2,104,581	+		PP_1879	0.80	+0.1
2,104,581	+		PP_1879	0.80	-0.2
2,104,581	+		PP_1879	0.80	-1.4
2,104,581	+		PP_1879	0.80	+0.3
2,104,581	+		PP_1879	0.80	-0.5
2,104,581	+		PP_1879	0.80	-0.9
2,104,581	+		PP_1879	0.80	-0.3
2,104,582	-		PP_1879	0.80	-0.3
2,104,582	-		PP_1879	0.80	-0.0
2,104,582	-		PP_1879	0.80	-1.3
2,104,598	+		PP_1879	0.81	-1.8
2,104,598	+		PP_1879	0.81	+0.6
2,104,598	+		PP_1879	0.81	+0.7
2,104,630	-		PP_1879	0.83	+2.0
2,104,630	-		PP_1879	0.83	-0.2
2,104,630	-		PP_1879	0.83	-1.0
2,104,630	-		PP_1879	0.83	+0.1
2,104,643	-		PP_1879	0.84	-0.5
2,104,665	+		PP_1879	0.86	-0.4
2,104,717	+		PP_1879	0.89	+0.2
2,104,717	+		PP_1879	0.89	-0.4
2,104,717	+		PP_1879	0.89	-0.0
2,104,717	+		PP_1879	0.89	-1.1
2,104,718	-		PP_1879	0.89	-0.5
2,104,718	-		PP_1879	0.89	-0.2
2,104,718	-		PP_1879	0.89	-0.9
2,104,718	-		PP_1879	0.89	-0.3
2,104,779	+				+0.3
2,104,780	-				+0.0
2,104,926	-				-0.3
2,105,147	+		PP_1880	0.10	+0.5
2,105,147	+		PP_1880	0.10	-0.2
2,105,148	-		PP_1880	0.10	-0.5
2,105,148	-		PP_1880	0.10	-0.4
2,105,161	-		PP_1880	0.11	-0.8
2,105,227	-		PP_1880	0.14	-1.6
2,105,264	+		PP_1880	0.16	-1.1
2,105,264	+		PP_1880	0.16	-1.1
2,105,265	-		PP_1880	0.16	+0.4
2,105,382	-		PP_1880	0.21	+1.0
2,105,465	+		PP_1880	0.25	-0.6
2,105,466	-		PP_1880	0.25	-0.3
2,105,466	-		PP_1880	0.25	-0.3
2,105,466	-		PP_1880	0.25	-0.6
2,105,468	+		PP_1880	0.25	+1.0
2,105,469	-		PP_1880	0.25	-0.6
2,105,498	+		PP_1880	0.26	-0.0
2,105,513	+		PP_1880	0.27	-0.5
2,105,513	+		PP_1880	0.27	-0.6
2,105,513	+		PP_1880	0.27	-0.4
2,105,513	+		PP_1880	0.27	+0.2
2,105,657	+		PP_1880	0.33	+0.2
2,105,699	+		PP_1880	0.35	-1.8
2,105,699	+		PP_1880	0.35	+0.3
2,105,861	+		PP_1880	0.43	-1.0
2,105,895	-		PP_1880	0.44	-0.3
2,105,900	+		PP_1880	0.45	-0.4
2,105,901	-		PP_1880	0.45	-1.7
2,105,901	-		PP_1880	0.45	-1.0
2,105,901	-		PP_1880	0.45	+1.0
2,105,958	+		PP_1880	0.47	-1.1
2,105,958	+		PP_1880	0.47	-0.4
2,105,958	+		PP_1880	0.47	-2.1
2,106,426	+		PP_1880	0.68	+0.0
2,106,427	-		PP_1880	0.69	-1.6
2,106,525	+		PP_1880	0.73	-0.2
2,106,525	+		PP_1880	0.73	-0.6
2,106,526	-		PP_1880	0.73	-1.0
2,106,564	-		PP_1880	0.75	+0.7
2,106,652	+		PP_1880	0.79	-1.5
2,107,009	+				-0.3
2,107,009	+				+0.1
2,107,009	+				-1.2
2,107,010	-				+0.7
2,107,166	+				-1.8
2,107,197	+				-0.4
2,107,197	+				+0.2
2,107,207	-				-1.0
2,107,255	+				-0.1
2,107,257	+				+0.3
2,107,383	-				-1.1
2,107,383	-				-1.5
2,107,383	-				-1.2
2,107,383	-				-0.1
2,107,385	+				+1.4
2,107,385	+				-0.6
2,107,386	-				+0.1
2,107,386	-				-1.0
2,107,386	-				+0.8
2,107,386	-				+0.8
2,107,408	+				-0.1
2,107,408	+				-0.4
2,107,409	-				+2.0
2,107,409	-				+0.5
2,107,409	-				-1.6
2,107,409	-				-1.1
2,107,447	+				+0.8
2,107,448	-				+0.2
2,107,448	-				-0.9
2,107,448	-				+0.7
2,107,471	+				-1.8
2,107,579	+		PP_1881	0.14	-2.7
2,107,579	+		PP_1881	0.14	-1.8
2,107,579	+		PP_1881	0.14	-0.3
2,107,579	+		PP_1881	0.14	+0.1
2,107,579	+		PP_1881	0.14	-0.3
2,107,580	-		PP_1881	0.14	+1.1
2,107,580	-		PP_1881	0.14	+1.2
2,107,580	-		PP_1881	0.14	-0.4
2,107,580	-		PP_1881	0.14	+0.9
2,107,580	-		PP_1881	0.14	+0.4
2,107,767	+		PP_1881	0.23	-1.5
2,107,768	-		PP_1881	0.23	+0.4
2,107,768	-		PP_1881	0.23	-0.9
2,107,773	+		PP_1881	0.23	+0.9
2,107,774	-		PP_1881	0.23	+0.7
2,107,831	+		PP_1881	0.26	-0.2
2,107,831	+		PP_1881	0.26	+0.8
2,107,832	-		PP_1881	0.26	+0.0
2,107,832	-		PP_1881	0.26	+0.6
2,107,856	+		PP_1881	0.27	+1.5
2,107,856	+		PP_1881	0.27	-0.2
2,107,872	-		PP_1881	0.28	-2.2
2,107,872	-		PP_1881	0.28	-0.8
2,107,873	+		PP_1881	0.28	+0.4
2,107,873	+		PP_1881	0.28	+0.6
2,107,873	+		PP_1881	0.28	-1.2
2,107,873	+		PP_1881	0.28	-0.2
2,107,873	+		PP_1881	0.28	+0.4
2,107,873	+		PP_1881	0.28	-1.4
2,107,873	+		PP_1881	0.28	-0.3
2,107,874	-		PP_1881	0.28	-0.6
2,107,874	-		PP_1881	0.28	+0.4
2,107,874	-		PP_1881	0.28	-0.5
2,107,960	+		PP_1881	0.32	+1.1
2,107,961	-		PP_1881	0.32	-1.1
2,107,971	+		PP_1881	0.33	+0.3
2,107,998	+		PP_1881	0.34	-1.0
2,108,054	+		PP_1881	0.37	-2.5