Strain Fitness in Pseudomonas putida KT2440 around PP_4564

Experiment: Valerolactone (C) pH 6.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4562 and PP_4563 are separated by 5 nucleotidesPP_4563 and PP_4564 are separated by 130 nucleotidesPP_4564 and PP_4565 are separated by 19 nucleotides PP_4562: PP_4562 - conserved protein of unknown function, at 5,182,511 to 5,182,891 _4562 PP_4563: PP_4563 - conserved protein of unknown function, at 5,182,897 to 5,183,733 _4563 PP_4564: PP_4564 - putative Lipoprotein, at 5,183,864 to 5,184,724 _4564 PP_4565: PP_4565 - Isocitrate dehydrogenase kinase/phosphatase, at 5,184,744 to 5,186,459 _4565 Position (kb) 5183 5184 5185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5182.881 kb on + strandat 5182.882 kb on - strandat 5182.890 kb on - strandat 5182.890 kb on - strandat 5183.301 kb on - strand, within PP_4563at 5183.301 kb on - strand, within PP_4563at 5183.301 kb on - strand, within PP_4563at 5183.324 kb on + strand, within PP_4563at 5183.375 kb on + strand, within PP_4563at 5183.376 kb on - strand, within PP_4563at 5183.393 kb on + strand, within PP_4563at 5183.394 kb on - strand, within PP_4563at 5183.394 kb on - strand, within PP_4563at 5183.472 kb on + strand, within PP_4563at 5183.473 kb on - strand, within PP_4563at 5183.573 kb on + strand, within PP_4563at 5183.573 kb on + strand, within PP_4563at 5183.573 kb on + strand, within PP_4563at 5183.574 kb on - strand, within PP_4563at 5183.627 kb on + strand, within PP_4563at 5183.627 kb on + strand, within PP_4563at 5183.627 kb on + strand, within PP_4563at 5183.628 kb on - strand, within PP_4563at 5183.628 kb on - strand, within PP_4563at 5183.628 kb on - strandat 5183.628 kb on - strand, within PP_4563at 5183.628 kb on - strand, within PP_4563at 5183.714 kb on + strandat 5183.766 kb on + strandat 5183.767 kb on - strandat 5183.767 kb on - strandat 5183.831 kb on + strandat 5183.831 kb on + strandat 5183.832 kb on - strandat 5183.832 kb on - strandat 5183.832 kb on - strandat 5183.871 kb on + strandat 5183.872 kb on - strandat 5183.893 kb on + strandat 5184.103 kb on - strand, within PP_4564at 5184.246 kb on + strand, within PP_4564at 5184.247 kb on - strand, within PP_4564at 5184.299 kb on + strand, within PP_4564at 5184.299 kb on + strand, within PP_4564at 5184.299 kb on + strand, within PP_4564at 5184.300 kb on - strand, within PP_4564at 5184.300 kb on - strand, within PP_4564at 5184.795 kb on + strandat 5184.795 kb on + strandat 5184.821 kb on - strandat 5184.821 kb on - strandat 5184.833 kb on - strandat 5184.833 kb on - strandat 5184.833 kb on - strandat 5184.833 kb on - strandat 5184.935 kb on - strand, within PP_4565at 5185.024 kb on + strand, within PP_4565at 5185.031 kb on - strand, within PP_4565at 5185.031 kb on - strand, within PP_4565at 5185.031 kb on - strand, within PP_4565at 5185.129 kb on + strand, within PP_4565at 5185.130 kb on - strand, within PP_4565at 5185.177 kb on + strand, within PP_4565at 5185.178 kb on - strand, within PP_4565at 5185.381 kb on + strand, within PP_4565at 5185.381 kb on + strand, within PP_4565at 5185.381 kb on + strand, within PP_4565at 5185.381 kb on + strand, within PP_4565at 5185.382 kb on - strand, within PP_4565at 5185.454 kb on + strand, within PP_4565at 5185.455 kb on - strand, within PP_4565at 5185.558 kb on + strand, within PP_4565at 5185.582 kb on + strand, within PP_4565at 5185.582 kb on + strand, within PP_4565at 5185.583 kb on - strand, within PP_4565at 5185.598 kb on + strand, within PP_4565at 5185.599 kb on - strand, within PP_4565at 5185.599 kb on - strand, within PP_4565at 5185.600 kb on + strand, within PP_4565at 5185.600 kb on + strand, within PP_4565at 5185.600 kb on + strand, within PP_4565at 5185.600 kb on + strand, within PP_4565at 5185.600 kb on + strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.601 kb on - strand, within PP_4565at 5185.684 kb on + strand, within PP_4565at 5185.684 kb on + strand, within PP_4565at 5185.684 kb on + strand, within PP_4565

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Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactone (C) pH 6.5
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5,182,881 + -1.8
5,182,882 - -0.6
5,182,890 - +0.5
5,182,890 - +1.0
5,183,301 - PP_4563 0.48 +1.5
5,183,301 - PP_4563 0.48 -0.2
5,183,301 - PP_4563 0.48 +1.2
5,183,324 + PP_4563 0.51 -0.6
5,183,375 + PP_4563 0.57 -1.3
5,183,376 - PP_4563 0.57 -0.3
5,183,393 + PP_4563 0.59 +3.8
5,183,394 - PP_4563 0.59 +0.1
5,183,394 - PP_4563 0.59 +1.6
5,183,472 + PP_4563 0.69 -1.1
5,183,473 - PP_4563 0.69 +0.5
5,183,573 + PP_4563 0.81 +0.5
5,183,573 + PP_4563 0.81 +0.2
5,183,573 + PP_4563 0.81 -2.3
5,183,574 - PP_4563 0.81 +0.5
5,183,627 + PP_4563 0.87 -1.1
5,183,627 + PP_4563 0.87 -1.1
5,183,627 + PP_4563 0.87 -0.1
5,183,628 - PP_4563 0.87 -1.6
5,183,628 - PP_4563 0.87 +0.2
5,183,628 - +1.8
5,183,628 - PP_4563 0.87 +0.0
5,183,628 - PP_4563 0.87 +0.7
5,183,714 + +1.1
5,183,766 + -2.0
5,183,767 - -0.0
5,183,767 - -1.0
5,183,831 + +0.9
5,183,831 + +2.2
5,183,832 - -0.5
5,183,832 - +0.8
5,183,832 - +0.4
5,183,871 + -0.5
5,183,872 - +1.0
5,183,893 + +1.1
5,184,103 - PP_4564 0.28 +2.8
5,184,246 + PP_4564 0.44 +0.1
5,184,247 - PP_4564 0.44 +0.4
5,184,299 + PP_4564 0.51 -0.3
5,184,299 + PP_4564 0.51 +1.5
5,184,299 + PP_4564 0.51 +0.3
5,184,300 - PP_4564 0.51 -1.5
5,184,300 - PP_4564 0.51 -0.0
5,184,795 + +1.2
5,184,795 + +0.5
5,184,821 - +1.5
5,184,821 - +0.2
5,184,833 - -3.0
5,184,833 - -1.1
5,184,833 - -0.3
5,184,833 - -0.5
5,184,935 - PP_4565 0.11 +0.9
5,185,024 + PP_4565 0.16 -0.5
5,185,031 - PP_4565 0.17 +0.6
5,185,031 - PP_4565 0.17 +0.8
5,185,031 - PP_4565 0.17 -2.1
5,185,129 + PP_4565 0.22 -0.9
5,185,130 - PP_4565 0.22 +0.5
5,185,177 + PP_4565 0.25 -0.1
5,185,178 - PP_4565 0.25 +1.8
5,185,381 + PP_4565 0.37 -0.3
5,185,381 + PP_4565 0.37 -0.1
5,185,381 + PP_4565 0.37 +1.2
5,185,381 + PP_4565 0.37 +2.8
5,185,382 - PP_4565 0.37 +3.2
5,185,454 + PP_4565 0.41 +0.3
5,185,455 - PP_4565 0.41 -1.3
5,185,558 + PP_4565 0.47 -0.4
5,185,582 + PP_4565 0.49 +1.2
5,185,582 + PP_4565 0.49 -0.7
5,185,583 - PP_4565 0.49 +0.8
5,185,598 + PP_4565 0.50 +1.4
5,185,599 - PP_4565 0.50 +0.8
5,185,599 - PP_4565 0.50 -0.2
5,185,600 + PP_4565 0.50 -1.1
5,185,600 + PP_4565 0.50 -1.0
5,185,600 + PP_4565 0.50 -0.4
5,185,600 + PP_4565 0.50 -0.0
5,185,600 + PP_4565 0.50 -1.6
5,185,601 - PP_4565 0.50 -0.3
5,185,601 - PP_4565 0.50 +0.8
5,185,601 - PP_4565 0.50 -0.4
5,185,601 - PP_4565 0.50 -1.5
5,185,601 - PP_4565 0.50 -1.8
5,185,601 - PP_4565 0.50 -0.8
5,185,601 - PP_4565 0.50 -0.8
5,185,601 - PP_4565 0.50 +0.2
5,185,601 - PP_4565 0.50 -0.9
5,185,684 + PP_4565 0.55 +0.2
5,185,684 + PP_4565 0.55 -1.0
5,185,684 + PP_4565 0.55 -0.4

Or see this region's nucleotide sequence