Experiment: Valerolactone (C) pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3747 and PP_3748 overlap by 8 nucleotides PP_3748 and PP_3749 are separated by 139 nucleotides PP_3749 and PP_3750 are separated by 91 nucleotides
PP_3747: PP_3747 - glycolate oxidase, iron-sulfur subunit, at 4,276,605 to 4,277,840
_3747
PP_3748: PP_3748 - conserved hypothetical protein, at 4,277,833 to 4,278,231
_3748
PP_3749: PP_3749 - conserved protein of unknown function, at 4,278,371 to 4,278,709
_3749
PP_3750: PP_3750 - Transcriptional regulator, GntR family, at 4,278,801 to 4,280,234
_3750
Position (kb) 4277
4278
4279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4276.875 kb on + strand, within PP_3747 at 4276.876 kb on - strand, within PP_3747 at 4277.033 kb on - strand, within PP_3747 at 4277.157 kb on - strand, within PP_3747 at 4277.292 kb on - strand, within PP_3747 at 4277.333 kb on + strand, within PP_3747 at 4277.376 kb on + strand, within PP_3747 at 4277.407 kb on - strand, within PP_3747 at 4277.407 kb on - strand, within PP_3747 at 4277.643 kb on + strand, within PP_3747 at 4277.643 kb on + strand, within PP_3747 at 4277.677 kb on + strand, within PP_3747 at 4277.677 kb on + strand, within PP_3747 at 4277.740 kb on + strand at 4277.740 kb on + strand at 4277.740 kb on + strand at 4277.740 kb on + strand at 4277.741 kb on - strand at 4277.741 kb on - strand at 4277.741 kb on - strand at 4277.741 kb on - strand at 4277.838 kb on + strand at 4277.838 kb on + strand at 4277.998 kb on + strand, within PP_3748 at 4277.998 kb on + strand, within PP_3748 at 4278.170 kb on + strand, within PP_3748 at 4278.171 kb on - strand, within PP_3748 at 4278.229 kb on + strand at 4278.229 kb on + strand at 4278.230 kb on - strand at 4278.262 kb on + strand at 4278.262 kb on + strand at 4278.262 kb on + strand at 4278.263 kb on - strand at 4278.263 kb on - strand at 4278.263 kb on - strand at 4278.297 kb on - strand at 4278.583 kb on + strand, within PP_3749 at 4278.583 kb on + strand, within PP_3749 at 4278.583 kb on + strand, within PP_3749 at 4278.583 kb on + strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.584 kb on - strand, within PP_3749 at 4278.680 kb on + strand at 4278.680 kb on + strand at 4278.680 kb on + strand at 4278.681 kb on - strand at 4278.681 kb on - strand at 4278.682 kb on + strand at 4278.683 kb on - strand at 4278.683 kb on - strand at 4278.683 kb on - strand at 4278.852 kb on + strand at 4278.984 kb on + strand, within PP_3750 at 4278.984 kb on + strand, within PP_3750 at 4278.985 kb on - strand, within PP_3750 at 4279.225 kb on - strand, within PP_3750 at 4279.225 kb on - strand, within PP_3750 at 4279.225 kb on - strand, within PP_3750
Per-strain Table
Position Strand Gene LocusTag Fraction Valerolactone (C) pH 6.5 remove 4,276,875 + PP_3747 0.22 +0.9 4,276,876 - PP_3747 0.22 -1.3 4,277,033 - PP_3747 0.35 -0.6 4,277,157 - PP_3747 0.45 -2.0 4,277,292 - PP_3747 0.56 -0.2 4,277,333 + PP_3747 0.59 +0.9 4,277,376 + PP_3747 0.62 -0.9 4,277,407 - PP_3747 0.65 -1.2 4,277,407 - PP_3747 0.65 -0.1 4,277,643 + PP_3747 0.84 +1.2 4,277,643 + PP_3747 0.84 +0.3 4,277,677 + PP_3747 0.87 -1.3 4,277,677 + PP_3747 0.87 -0.9 4,277,740 + +1.7 4,277,740 + -0.1 4,277,740 + +0.5 4,277,740 + +1.4 4,277,741 - -1.4 4,277,741 - +0.2 4,277,741 - -1.4 4,277,741 - +0.1 4,277,838 + +1.5 4,277,838 + +1.1 4,277,998 + PP_3748 0.41 +0.4 4,277,998 + PP_3748 0.41 +0.4 4,278,170 + PP_3748 0.84 -0.8 4,278,171 - PP_3748 0.85 -3.0 4,278,229 + -0.7 4,278,229 + +1.1 4,278,230 - +1.7 4,278,262 + +1.1 4,278,262 + -1.1 4,278,262 + -0.3 4,278,263 - +2.5 4,278,263 - -0.2 4,278,263 - +3.0 4,278,297 - -0.4 4,278,583 + PP_3749 0.63 +1.8 4,278,583 + PP_3749 0.63 -0.2 4,278,583 + PP_3749 0.63 -1.8 4,278,583 + PP_3749 0.63 -0.5 4,278,584 - PP_3749 0.63 -0.1 4,278,584 - PP_3749 0.63 +0.3 4,278,584 - PP_3749 0.63 -0.6 4,278,584 - PP_3749 0.63 +0.2 4,278,584 - PP_3749 0.63 -0.5 4,278,584 - PP_3749 0.63 +1.1 4,278,680 + -0.3 4,278,680 + -0.2 4,278,680 + -0.5 4,278,681 - +0.7 4,278,681 - +1.1 4,278,682 + +1.2 4,278,683 - -1.2 4,278,683 - -0.2 4,278,683 - -0.1 4,278,852 + -0.6 4,278,984 + PP_3750 0.13 -0.8 4,278,984 + PP_3750 0.13 +1.7 4,278,985 - PP_3750 0.13 -1.2 4,279,225 - PP_3750 0.30 -0.2 4,279,225 - PP_3750 0.30 +1.1 4,279,225 - PP_3750 0.30 -1.9
Or see this region's nucleotide sequence