Strain Fitness in Pseudomonas putida KT2440 around PP_0708

Experiment: Valerolactone (C) pH 6.5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0707 and PP_0708 are separated by 131 nucleotidesPP_0708 and PP_0709 are separated by 13 nucleotides PP_0707: PP_0707 - putative membrane protein, at 820,630 to 823,041 _0707 PP_0708: PP_0708 - putative Betaine-aldehyde dehydrogenase, at 823,173 to 824,603 _0708 PP_0709: PP_0709 - Transporter, NCS1 nucleoside transporter family, at 824,617 to 826,116 _0709 Position (kb) 823 824 825Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.438 kb on + strand, within PP_0707at 822.439 kb on - strand, within PP_0707at 822.601 kb on - strand, within PP_0707at 822.735 kb on + strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.736 kb on - strand, within PP_0707at 822.797 kb on - strand, within PP_0707at 822.889 kb on + strandat 822.889 kb on + strandat 822.890 kb on - strandat 822.890 kb on - strandat 823.039 kb on + strandat 823.191 kb on + strandat 823.191 kb on + strandat 823.210 kb on + strandat 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.371 kb on + strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.372 kb on - strand, within PP_0708at 823.376 kb on + strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.377 kb on - strand, within PP_0708at 823.505 kb on + strand, within PP_0708at 823.507 kb on + strand, within PP_0708at 823.507 kb on + strandat 823.508 kb on - strand, within PP_0708at 823.508 kb on - strand, within PP_0708at 823.508 kb on - strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.597 kb on + strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 823.598 kb on - strand, within PP_0708at 824.047 kb on + strand, within PP_0708at 824.273 kb on - strand, within PP_0708at 824.337 kb on - strand, within PP_0708at 824.585 kb on + strandat 824.585 kb on + strandat 824.586 kb on - strandat 824.586 kb on - strandat 824.587 kb on + strandat 824.587 kb on + strandat 824.588 kb on - strandat 824.588 kb on - strandat 824.646 kb on + strandat 824.646 kb on + strandat 824.693 kb on + strandat 824.735 kb on + strandat 824.735 kb on + strandat 824.736 kb on - strandat 824.906 kb on + strand, within PP_0709at 824.907 kb on - strand, within PP_0709at 824.907 kb on - strand, within PP_0709at 824.936 kb on - strand, within PP_0709at 824.936 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 824.958 kb on - strand, within PP_0709at 825.018 kb on + strand, within PP_0709at 825.018 kb on + strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.019 kb on - strand, within PP_0709at 825.044 kb on - strand, within PP_0709at 825.044 kb on - strand, within PP_0709at 825.118 kb on - strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.176 kb on + strand, within PP_0709at 825.177 kb on - strand, within PP_0709at 825.246 kb on + strand, within PP_0709at 825.247 kb on - strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.275 kb on + strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.276 kb on - strand, within PP_0709at 825.293 kb on + strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.294 kb on - strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.327 kb on + strand, within PP_0709at 825.328 kb on - strand, within PP_0709at 825.419 kb on + strand, within PP_0709at 825.420 kb on - strand, within PP_0709

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactone (C) pH 6.5
remove
822,438 + PP_0707 0.75 -1.0
822,438 + PP_0707 0.75 +1.3
822,438 + PP_0707 0.75 +1.3
822,438 + PP_0707 0.75 +1.9
822,439 - PP_0707 0.75 +0.8
822,601 - PP_0707 0.82 -0.7
822,735 + PP_0707 0.87 +1.3
822,736 - PP_0707 0.87 -0.6
822,736 - PP_0707 0.87 -0.1
822,736 - PP_0707 0.87 -0.3
822,736 - PP_0707 0.87 -0.1
822,736 - PP_0707 0.87 +0.1
822,797 - PP_0707 0.90 +0.4
822,889 + +0.3
822,889 + -2.0
822,890 - +0.9
822,890 - +1.3
823,039 + +0.4
823,191 + +1.7
823,191 + +1.1
823,210 + +1.1
823,371 + PP_0708 0.14 -0.5
823,371 + PP_0708 0.14 -0.1
823,371 + PP_0708 0.14 +0.2
823,371 + PP_0708 0.14 +1.4
823,372 - PP_0708 0.14 +0.1
823,372 - PP_0708 0.14 +0.5
823,372 - PP_0708 0.14 +0.8
823,372 - PP_0708 0.14 +0.2
823,372 - PP_0708 0.14 +0.8
823,376 + PP_0708 0.14 -0.6
823,377 - PP_0708 0.14 +2.5
823,377 - PP_0708 0.14 +0.4
823,377 - PP_0708 0.14 +0.8
823,505 + PP_0708 0.23 +0.3
823,507 + PP_0708 0.23 +0.7
823,507 + +2.9
823,508 - PP_0708 0.23 +0.6
823,508 - PP_0708 0.23 +1.1
823,508 - PP_0708 0.23 +0.8
823,597 + PP_0708 0.30 -0.4
823,597 + PP_0708 0.30 -1.3
823,597 + PP_0708 0.30 +1.4
823,598 - PP_0708 0.30 +0.7
823,598 - PP_0708 0.30 +0.7
823,598 - PP_0708 0.30 +2.1
824,047 + PP_0708 0.61 -1.1
824,273 - PP_0708 0.77 +1.9
824,337 - PP_0708 0.81 +1.6
824,585 + -0.7
824,585 + -1.0
824,586 - -0.5
824,586 - +3.9
824,587 + -0.8
824,587 + -0.0
824,588 - +2.9
824,588 - +1.1
824,646 + +0.4
824,646 + +0.4
824,693 + +2.7
824,735 + -0.4
824,735 + -0.8
824,736 - -0.9
824,906 + PP_0709 0.19 +0.4
824,907 - PP_0709 0.19 +0.1
824,907 - PP_0709 0.19 +0.3
824,936 - PP_0709 0.21 +1.6
824,936 - PP_0709 0.21 +0.4
824,958 - PP_0709 0.23 +0.4
824,958 - PP_0709 0.23 +0.6
824,958 - PP_0709 0.23 -0.9
825,018 + PP_0709 0.27 -0.5
825,018 + PP_0709 0.27 +0.3
825,019 - PP_0709 0.27 +0.9
825,019 - PP_0709 0.27 +2.9
825,019 - PP_0709 0.27 -0.6
825,044 - PP_0709 0.28 -0.5
825,044 - PP_0709 0.28 -0.3
825,118 - PP_0709 0.33 +0.4
825,176 + PP_0709 0.37 +1.3
825,176 + PP_0709 0.37 +1.3
825,176 + PP_0709 0.37 +1.9
825,176 + PP_0709 0.37 -0.5
825,177 - PP_0709 0.37 +0.0
825,246 + PP_0709 0.42 -0.1
825,247 - PP_0709 0.42 +1.9
825,275 + PP_0709 0.44 +0.5
825,275 + PP_0709 0.44 -0.4
825,275 + PP_0709 0.44 +0.2
825,275 + PP_0709 0.44 -1.6
825,275 + PP_0709 0.44 +0.5
825,275 + PP_0709 0.44 +0.2
825,276 - PP_0709 0.44 -1.2
825,276 - PP_0709 0.44 -0.3
825,276 - PP_0709 0.44 +0.2
825,276 - PP_0709 0.44 +1.2
825,276 - PP_0709 0.44 +0.2
825,276 - PP_0709 0.44 -0.2
825,276 - PP_0709 0.44 -0.5
825,276 - PP_0709 0.44 -1.9
825,293 + PP_0709 0.45 -0.2
825,294 - PP_0709 0.45 -1.0
825,294 - PP_0709 0.45 -1.7
825,327 + PP_0709 0.47 -1.1
825,327 + PP_0709 0.47 +0.2
825,328 - PP_0709 0.47 +0.5
825,419 + PP_0709 0.53 +1.8
825,420 - PP_0709 0.54 +1.9

Or see this region's nucleotide sequence