Strain Fitness in Pseudomonas putida KT2440 around PP_0577

Experiment: Valerolactone (C) pH 6.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0575 and PP_0576 are separated by 305 nucleotidesPP_0576 and PP_0577 are separated by 19 nucleotidesPP_0577 and PP_0578 overlap by 38 nucleotidesPP_0578 and PP_0579 overlap by 4 nucleotides PP_0575: PP_0575 - conserved membrane protein of unknown function, at 673,638 to 674,108 _0575 PP_0576: PP_0576 - putative Lipoprotein, at 674,414 to 674,983 _0576 PP_0577: PP_0577 - conserved protein of unknown function, at 675,003 to 675,698 _0577 PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410 _0578 PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805 _0579 Position (kb) 675 676Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 674.041 kb on - strand, within PP_0575at 674.176 kb on - strandat 674.176 kb on - strandat 674.282 kb on + strandat 674.293 kb on + strandat 674.293 kb on + strandat 674.293 kb on + strandat 674.293 kb on + strandat 674.293 kb on + strandat 674.293 kb on + strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.294 kb on - strandat 674.297 kb on + strandat 674.297 kb on + strandat 674.297 kb on + strandat 674.297 kb on + strandat 674.298 kb on - strandat 674.364 kb on + strandat 674.416 kb on - strandat 674.436 kb on + strandat 674.436 kb on + strandat 674.437 kb on - strandat 674.461 kb on + strandat 674.462 kb on - strandat 674.502 kb on + strand, within PP_0576at 674.537 kb on + strand, within PP_0576at 674.538 kb on - strand, within PP_0576at 674.592 kb on + strand, within PP_0576at 674.593 kb on - strand, within PP_0576at 674.593 kb on - strand, within PP_0576at 674.593 kb on - strand, within PP_0576at 674.616 kb on + strand, within PP_0576at 674.616 kb on + strand, within PP_0576at 674.616 kb on + strand, within PP_0576at 674.616 kb on + strand, within PP_0576at 674.617 kb on - strand, within PP_0576at 674.668 kb on - strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.709 kb on + strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.710 kb on - strand, within PP_0576at 674.717 kb on + strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.718 kb on - strand, within PP_0576at 674.748 kb on - strand, within PP_0576at 674.875 kb on + strand, within PP_0576at 674.876 kb on - strand, within PP_0576at 674.876 kb on - strand, within PP_0576at 674.876 kb on - strand, within PP_0576at 674.880 kb on + strand, within PP_0576at 674.963 kb on + strandat 674.964 kb on - strandat 674.964 kb on - strandat 675.001 kb on + strandat 675.001 kb on + strandat 675.001 kb on + strandat 675.001 kb on + strandat 675.002 kb on - strandat 675.002 kb on - strandat 675.005 kb on - strandat 675.137 kb on - strand, within PP_0577at 675.137 kb on - strand, within PP_0577at 675.137 kb on - strand, within PP_0577at 675.137 kb on - strand, within PP_0577at 675.172 kb on + strand, within PP_0577at 675.172 kb on + strand, within PP_0577at 675.172 kb on + strand, within PP_0577at 675.173 kb on - strand, within PP_0577at 675.176 kb on + strand, within PP_0577at 675.177 kb on - strand, within PP_0577at 675.199 kb on + strand, within PP_0577at 675.259 kb on + strand, within PP_0577at 675.259 kb on + strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.263 kb on - strand, within PP_0577at 675.271 kb on + strand, within PP_0577at 675.271 kb on + strand, within PP_0577at 675.271 kb on + strand, within PP_0577at 675.272 kb on - strand, within PP_0577at 675.280 kb on + strand, within PP_0577at 675.317 kb on + strand, within PP_0577at 675.499 kb on + strand, within PP_0577at 675.499 kb on + strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.569 kb on - strand, within PP_0577at 675.631 kb on + strandat 675.631 kb on + strandat 675.640 kb on + strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.641 kb on - strandat 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.786 kb on + strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.787 kb on - strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.788 kb on + strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.789 kb on - strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.834 kb on + strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.835 kb on - strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 675.977 kb on + strand, within PP_0578at 676.358 kb on + strandat 676.358 kb on + strandat 676.359 kb on - strandat 676.359 kb on - strandat 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579at 676.498 kb on + strand, within PP_0579

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Per-strain Table

Position Strand Gene LocusTag Fraction Valerolactone (C) pH 6.5
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674,041 - PP_0575 0.86 +0.9
674,176 - -0.3
674,176 - +0.4
674,282 + +0.6
674,293 + -1.5
674,293 + +0.5
674,293 + -0.1
674,293 + +0.6
674,293 + -0.2
674,293 + -1.0
674,294 - -0.4
674,294 - -0.7
674,294 - -0.7
674,294 - +0.4
674,294 - -0.4
674,294 - -1.0
674,294 - -0.1
674,294 - +0.0
674,294 - +0.4
674,297 + +0.6
674,297 + -0.2
674,297 + +1.1
674,297 + -0.0
674,298 - +0.4
674,364 + +1.7
674,416 - -1.0
674,436 + +3.9
674,436 + -0.2
674,437 - +0.8
674,461 + -0.3
674,462 - -0.3
674,502 + PP_0576 0.15 +0.4
674,537 + PP_0576 0.22 +0.4
674,538 - PP_0576 0.22 -0.4
674,592 + PP_0576 0.31 -0.3
674,593 - PP_0576 0.31 -1.0
674,593 - PP_0576 0.31 +0.2
674,593 - PP_0576 0.31 +0.2
674,616 + PP_0576 0.35 -0.4
674,616 + PP_0576 0.35 -0.3
674,616 + PP_0576 0.35 -0.8
674,616 + PP_0576 0.35 +0.1
674,617 - PP_0576 0.36 +1.7
674,668 - PP_0576 0.45 -2.5
674,709 + PP_0576 0.52 +2.2
674,709 + PP_0576 0.52 -1.1
674,709 + PP_0576 0.52 -1.1
674,709 + PP_0576 0.52 -0.3
674,709 + PP_0576 0.52 -0.2
674,710 - PP_0576 0.52 +0.1
674,710 - PP_0576 0.52 -0.8
674,710 - PP_0576 0.52 -0.0
674,710 - PP_0576 0.52 -0.9
674,710 - PP_0576 0.52 -1.0
674,710 - PP_0576 0.52 +0.8
674,710 - PP_0576 0.52 -0.6
674,717 + PP_0576 0.53 +1.9
674,718 - PP_0576 0.53 -0.2
674,718 - PP_0576 0.53 -1.1
674,718 - PP_0576 0.53 -2.1
674,718 - PP_0576 0.53 -1.3
674,748 - PP_0576 0.59 +0.7
674,875 + PP_0576 0.81 -0.1
674,876 - PP_0576 0.81 -0.8
674,876 - PP_0576 0.81 -0.6
674,876 - PP_0576 0.81 -0.6
674,880 + PP_0576 0.82 -0.2
674,963 + +0.1
674,964 - -0.5
674,964 - +1.1
675,001 + -1.0
675,001 + +0.7
675,001 + -1.1
675,001 + +0.7
675,002 - -2.4
675,002 - -0.7
675,005 - -0.3
675,137 - PP_0577 0.19 -0.1
675,137 - PP_0577 0.19 +0.4
675,137 - PP_0577 0.19 -0.4
675,137 - PP_0577 0.19 -0.3
675,172 + PP_0577 0.24 +1.9
675,172 + PP_0577 0.24 +1.0
675,172 + PP_0577 0.24 -1.5
675,173 - PP_0577 0.24 +1.3
675,176 + PP_0577 0.25 -1.5
675,177 - PP_0577 0.25 -0.3
675,199 + PP_0577 0.28 -1.3
675,259 + PP_0577 0.37 +0.3
675,259 + PP_0577 0.37 -1.0
675,263 - PP_0577 0.37 -0.6
675,263 - PP_0577 0.37 -0.3
675,263 - PP_0577 0.37 -0.2
675,263 - PP_0577 0.37 -1.6
675,271 + PP_0577 0.39 +0.4
675,271 + PP_0577 0.39 +0.9
675,271 + PP_0577 0.39 -2.1
675,272 - PP_0577 0.39 -1.8
675,280 + PP_0577 0.40 -0.5
675,317 + PP_0577 0.45 +2.9
675,499 + PP_0577 0.71 +1.0
675,499 + PP_0577 0.71 -1.8
675,569 - PP_0577 0.81 +0.7
675,569 - PP_0577 0.81 +0.8
675,569 - PP_0577 0.81 +1.7
675,569 - PP_0577 0.81 -0.7
675,569 - PP_0577 0.81 -1.5
675,631 + +1.9
675,631 + +0.9
675,640 + +0.6
675,641 - +3.9
675,641 - +0.1
675,641 - -1.5
675,641 - +1.4
675,641 - -0.6
675,641 - -1.1
675,786 + PP_0578 0.17 +0.7
675,786 + PP_0578 0.17 +0.1
675,786 + PP_0578 0.17 +1.2
675,786 + PP_0578 0.17 -1.3
675,786 + PP_0578 0.17 -0.6
675,786 + PP_0578 0.17 -0.0
675,786 + PP_0578 0.17 +0.1
675,787 - PP_0578 0.17 +1.9
675,787 - PP_0578 0.17 +0.1
675,787 - PP_0578 0.17 +2.9
675,788 + PP_0578 0.17 +2.3
675,788 + PP_0578 0.17 +2.5
675,788 + PP_0578 0.17 +1.1
675,788 + PP_0578 0.17 +0.2
675,789 - PP_0578 0.17 -0.4
675,789 - PP_0578 0.17 +1.3
675,834 + PP_0578 0.23 -0.9
675,834 + PP_0578 0.23 -0.7
675,834 + PP_0578 0.23 +0.9
675,835 - PP_0578 0.23 +0.6
675,835 - PP_0578 0.23 +0.6
675,835 - PP_0578 0.23 -0.1
675,977 + PP_0578 0.42 +0.4
675,977 + PP_0578 0.42 -1.0
676,358 + +0.1
676,358 + +0.2
676,359 - -0.7
676,359 - -1.5
676,498 + PP_0579 0.23 -2.5
676,498 + PP_0579 0.23 +0.6
676,498 + PP_0579 0.23 +0.3

Or see this region's nucleotide sequence