Strain Fitness in Escherichia coli BW25113 around b3664

Experiment: Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
3,839,511	-	nepI	b3662	0.79	+0.9
3,839,511	-	nepI	b3662	0.79	+1.3
3,839,772	-				+0.8
3,839,878	+				-0.3
3,839,955	-				-0.2
3,839,955	-				+0.7
3,839,960	-				-1.5
3,839,974	+				-0.0
3,840,021	-	yicN	b3663	0.11	+0.3
3,840,085	+	yicN	b3663	0.25	+0.1
3,840,085	+	yicN	b3663	0.25	-5.0
3,840,200	-	yicN	b3663	0.50	-3.9
3,840,200	-	yicN	b3663	0.50	+0.2
3,840,204	-	yicN	b3663	0.51	+0.9
3,840,204	-	yicN	b3663	0.51	+0.2
3,840,289	+	yicN	b3663	0.70	+0.0
3,840,297	-	yicN	b3663	0.72	+0.3
3,840,304	+	yicN	b3663	0.73	+0.4
3,840,304	+	yicN	b3663	0.73	+0.3
3,840,316	+	yicN	b3663	0.76	+0.3
3,840,316	+	yicN	b3663	0.76	+0.4
3,840,324	-	yicN	b3663	0.77	-0.3
3,840,357	-	yicN	b3663	0.85	-0.8
3,840,371	+	yicN	b3663	0.88	+1.5
3,840,420	+				-2.2
3,840,420	+				+0.6
3,840,431	+				-0.5
3,840,501	+				+1.0
3,840,525	-				-0.2
3,840,542	-				+0.3
3,840,585	-				-0.2
3,840,602	-				+1.5
3,840,602	-				+0.7
3,840,626	+	yicO	b3664	0.11	-0.6
3,840,626	+	yicO	b3664	0.11	+1.8
3,840,636	+	yicO	b3664	0.12	+1.6
3,840,636	+	yicO	b3664	0.12	-0.1
3,840,657	-	yicO	b3664	0.13	+0.0
3,840,696	-	yicO	b3664	0.16	-4.5
3,840,729	+	yicO	b3664	0.19	-0.7
3,840,773	-	yicO	b3664	0.22	-0.2
3,840,792	+	yicO	b3664	0.24	-1.1
3,840,792	+	yicO	b3664	0.24	+0.6
3,840,804	+	yicO	b3664	0.24	+0.1
3,840,814	+	yicO	b3664	0.25	-0.5
3,840,814	+	yicO	b3664	0.25	-0.5
3,840,814	+	yicO	b3664	0.25	-0.1
3,840,822	-	yicO	b3664	0.26	+0.8
3,840,822	-	yicO	b3664	0.26	+1.1
3,840,827	-	yicO	b3664	0.26	+0.7
3,840,827	-	yicO	b3664	0.26	+1.4
3,840,827	-				+0.1
3,840,839	+	yicO	b3664	0.27	+0.8
3,840,839	+	yicO	b3664	0.27	+1.9
3,840,839	+	yicO	b3664	0.27	+0.3
3,840,848	-	yicO	b3664	0.28	-0.4
3,840,851	-	yicO	b3664	0.28	+0.9
3,840,855	+	yicO	b3664	0.28	-0.2
3,840,872	+	yicO	b3664	0.30	-0.3
3,840,873	-	yicO	b3664	0.30	+0.1
3,840,873	-	yicO	b3664	0.30	+0.1
3,840,873	-	yicO	b3664	0.30	-2.0
3,840,873	-	yicO	b3664	0.30	+0.2
3,840,878	-	yicO	b3664	0.30	+0.6
3,840,905	+	yicO	b3664	0.32	+1.1
3,840,905	+	yicO	b3664	0.32	+0.9
3,840,905	+	yicO	b3664	0.32	+1.3
3,840,906	+	yicO	b3664	0.32	+0.4
3,840,910	+	yicO	b3664	0.32	+1.3
3,840,913	-	yicO	b3664	0.33	+0.2
3,840,913	-	yicO	b3664	0.33	-1.3
3,840,916	+	yicO	b3664	0.33	+1.4
3,840,916	+	yicO	b3664	0.33	+0.8
3,840,916	+	yicO	b3664	0.33	-0.2
3,840,916	+	yicO	b3664	0.33	+2.3
3,840,920	+	yicO	b3664	0.33	+0.3
3,840,920	+	yicO	b3664	0.33	+1.6
3,840,925	-	yicO	b3664	0.33	+2.4
3,840,925	-	yicO	b3664	0.33	-4.6
3,840,925	-	yicO	b3664	0.33	+2.1
3,840,925	-	yicO	b3664	0.33	-2.3
3,840,928	-	yicO	b3664	0.34	-3.8
3,840,928	-	yicO	b3664	0.34	+1.9
3,840,928	-	yicO	b3664	0.34	-0.3
3,840,929	+	yicO	b3664	0.34	-1.4
3,840,941	-	yicO	b3664	0.35	-1.4
3,840,958	+	yicO	b3664	0.36	+0.2
3,840,960	+	yicO	b3664	0.36	-0.4
3,840,960	+	yicO	b3664	0.36	+0.1
3,840,962	+	yicO	b3664	0.36	+1.3
3,840,962	+	yicO	b3664	0.36	+0.8
3,840,964	+	yicO	b3664	0.36	-0.2
3,840,966	-	yicO	b3664	0.37	+1.5
3,840,968	-	yicO	b3664	0.37	+1.1
3,840,971	-	yicO	b3664	0.37	+2.7
3,840,981	+	yicO	b3664	0.38	-3.8
3,840,981	+	yicO	b3664	0.38	-0.5
3,840,981	+	yicO	b3664	0.38	-3.8
3,840,991	+	yicO	b3664	0.38	+1.4
3,840,998	+	yicO	b3664	0.39	+1.5
3,840,998	+	yicO	b3664	0.39	+0.4
3,841,007	-	yicO	b3664	0.40	+0.2
3,841,026	+	yicO	b3664	0.41	-4.5
3,841,026	+	yicO	b3664	0.41	-0.4
3,841,053	+	yicO	b3664	0.43	-1.4
3,841,059	-	yicO	b3664	0.44	-3.0
3,841,061	-	yicO	b3664	0.44	-0.5
3,841,077	+	yicO	b3664	0.45	-0.2
3,841,077	+	yicO	b3664	0.45	-2.3
3,841,080	-	yicO	b3664	0.45	+0.8
3,841,087	+	yicO	b3664	0.46	-3.5
3,841,118	+	yicO	b3664	0.48	-3.4
3,841,121	-	yicO	b3664	0.48	-0.9
3,841,127	+				+1.3
3,841,127	-	yicO	b3664	0.49	+2.1
3,841,145	+	yicO	b3664	0.50	-0.9
3,841,176	+	yicO	b3664	0.52	-2.8
3,841,176	+	yicO	b3664	0.52	+4.1
3,841,176	+	yicO	b3664	0.52	-0.0
3,841,176	+	yicO	b3664	0.52	-1.6
3,841,200	+	yicO	b3664	0.54	+1.5
3,841,214	+	yicO	b3664	0.55	-0.5
3,841,214	+	yicO	b3664	0.55	-1.8
3,841,265	+	yicO	b3664	0.59	-2.7
3,841,265	+	yicO	b3664	0.59	-1.5
3,841,273	+	yicO	b3664	0.60	-2.2
3,841,273	+	yicO	b3664	0.60	-1.7
3,841,274	-	yicO	b3664	0.60	+0.5
3,841,282	+	yicO	b3664	0.60	+1.5
3,841,292	-	yicO	b3664	0.61	-1.6
3,841,292	-	yicO	b3664	0.61	+0.4
3,841,298	-	yicO	b3664	0.61	-0.5
3,841,302	-	yicO	b3664	0.62	-0.7
3,841,363	-	yicO	b3664	0.66	+1.7
3,841,366	-	yicO	b3664	0.67	-4.6
3,841,366	-	yicO	b3664	0.67	+1.3
3,841,371	-	yicO	b3664	0.67	+0.2
3,841,371	-	yicO	b3664	0.67	-0.1
3,841,371	-	yicO	b3664	0.67	+1.0
3,841,371	-	yicO	b3664	0.67	+1.4
3,841,371	-	yicO	b3664	0.67	+0.7
3,841,376	-	yicO	b3664	0.67	+1.2
3,841,378	-	yicO	b3664	0.67	-2.6
3,841,378	-	yicO	b3664	0.67	-1.7
3,841,381	+	yicO	b3664	0.68	+2.1
3,841,383	-	yicO	b3664	0.68	-0.7
3,841,383	-	yicO	b3664	0.68	+0.4
3,841,411	-	yicO	b3664	0.70	+2.7
3,841,411	-	yicO	b3664	0.70	+0.9
3,841,411	-	yicO	b3664	0.70	-3.6
3,841,414	-	yicO	b3664	0.70	-1.0
3,841,415	+	yicO	b3664	0.70	+1.1
3,841,416	-	yicO	b3664	0.70	-1.4
3,841,416	-	yicO	b3664	0.70	+0.0
3,841,416	-	yicO	b3664	0.70	+1.1
3,841,421	-	yicO	b3664	0.71	-1.6
3,841,421	-	yicO	b3664	0.71	+2.1
3,841,423	-	yicO	b3664	0.71	-2.0
3,841,423	-	yicO	b3664	0.71	+0.3
3,841,453	+	yicO	b3664	0.73	+2.1
3,841,453	+	yicO	b3664	0.73	+6.6
3,841,469	+	yicO	b3664	0.74	-0.5
3,841,476	-	yicO	b3664	0.75	-0.0
3,841,476	-	yicO	b3664	0.75	-2.3
3,841,477	-	yicO	b3664	0.75	-0.7
3,841,477	-	yicO	b3664	0.75	-2.9
3,841,479	+	yicO	b3664	0.75	-1.6
3,841,487	+	yicO	b3664	0.76	+1.7
3,841,507	-	yicO	b3664	0.77	-1.3
3,841,566	+	yicO	b3664	0.81	-1.3
3,841,566	+	yicO	b3664	0.81	-1.5
3,841,581	+	yicO	b3664	0.83	-0.5
3,841,581	+	yicO	b3664	0.83	+1.4
3,841,589	-	yicO	b3664	0.83	-0.7
3,841,589	-	yicO	b3664	0.83	-0.3
3,841,594	-	yicO	b3664	0.84	-0.7
3,841,599	-	yicO	b3664	0.84	+2.6
3,841,599	-	yicO	b3664	0.84	+0.5
3,841,629	-	yicO	b3664	0.86	+0.5
3,841,636	+	yicO	b3664	0.87	-0.3
3,841,636	+	yicO	b3664	0.87	-0.6
3,841,636	+	yicO	b3664	0.87	+0.1
3,841,636	+	yicO	b3664	0.87	+2.2
3,841,649	-	yicO	b3664	0.88	+1.1
3,841,649	-	yicO	b3664	0.88	+2.1
3,841,675	+	yicO	b3664	0.90	-3.1
3,841,675	+	yicO	b3664	0.90	+0.3
3,841,678	+	yicO	b3664	0.90	+0.3
3,841,683	-				-1.1
3,841,683	-				-1.5
3,841,697	-				+0.1
3,841,702	+				+0.3
3,841,704	+				-0.1
3,841,711	+				-2.5
3,841,711	+				-0.8
3,841,711	+				-1.6
3,841,716	+				-0.3
3,841,719	+				+1.0
3,841,719	+				+1.4
3,841,726	+				-0.3
3,841,729	-				+2.1
3,841,729	-				+2.1
3,841,733	+				+0.5
3,841,733	+				-0.9
3,841,733	+				+1.2
3,841,733	+				+2.1
3,841,733	+				+1.6
3,841,734	-				+2.1
3,841,735	+				+0.7
3,841,737	+				+0.3
3,841,741	-				+2.1
3,841,765	+				-0.6
3,841,768	+				+2.1
3,841,768	+				+0.5
3,841,770	+				-4.7
3,841,770	+				+0.5
3,841,776	+				+1.1
3,841,777	+				-0.6
3,841,778	+				-0.6
3,841,781	+				+0.1
3,841,823	+				+0.9
3,841,827	+				-2.9
3,842,011	-				-1.2
3,842,069	+				+1.1
3,842,069	+				+1.1
3,842,095	-				-0.9
3,842,110	-				-1.3
3,842,110	-				-2.2
3,842,110	-				-1.0
3,842,110	-				-0.3
3,842,112	+				-0.9
3,842,121	-				+0.9
3,842,157	+				+0.8
3,842,165	-	ade	b3665	0.10	+1.1
3,842,167	-	ade	b3665	0.10	-3.6
3,842,167	-	ade	b3665	0.10	+0.1
3,842,170	-	ade	b3665	0.10	-2.1
3,842,170	-	ade	b3665	0.10	+0.4
3,842,172	-	ade	b3665	0.10	-3.0
3,842,172	-	ade	b3665	0.10	-1.1
3,842,179	+	ade	b3665	0.11	-0.1
3,842,179	+	ade	b3665	0.11	-0.2
3,842,179	+	ade	b3665	0.11	-0.2
3,842,179	+	ade	b3665	0.11	-1.9
3,842,179	+	ade	b3665	0.11	+1.5
3,842,179	+	ade	b3665	0.11	-4.2
3,842,179	+	ade	b3665	0.11	-2.9
3,842,179	+	ade	b3665	0.11	-0.1
3,842,181	+	ade	b3665	0.11	+1.1
3,842,181	-	ade	b3665	0.11	-1.2
3,842,181	-	ade	b3665	0.11	+0.4
3,842,182	-	ade	b3665	0.11	+1.0
3,842,182	-	ade	b3665	0.11	-0.7
3,842,187	-	ade	b3665	0.11	-1.1
3,842,187	-	ade	b3665	0.11	+1.1
3,842,187	-	ade	b3665	0.11	-1.8
3,842,187	-	ade	b3665	0.11	+0.9
3,842,187	-	ade	b3665	0.11	-0.5
3,842,187	-	ade	b3665	0.11	-1.6
3,842,187	-	ade	b3665	0.11	+0.7
3,842,187	-	ade	b3665	0.11	-3.6
3,842,187	-	ade	b3665	0.11	-2.5
3,842,205	-	ade	b3665	0.12	-0.5
3,842,216	-	ade	b3665	0.13	-0.8
3,842,216	-	ade	b3665	0.13	-3.1
3,842,233	+	ade	b3665	0.14	+0.9
3,842,234	+	ade	b3665	0.14	-4.2
3,842,238	-	ade	b3665	0.14	-0.5
3,842,268	+	ade	b3665	0.16	-5.0
3,842,425	+	ade	b3665	0.25	+0.4
3,842,433	-	ade	b3665	0.25	+1.2
3,842,438	-	ade	b3665	0.26	-0.4
3,842,443	-	ade	b3665	0.26	+1.6
3,842,443	-	ade	b3665	0.26	+1.4
3,842,443	-	ade	b3665	0.26	+0.1
3,842,533	-	ade	b3665	0.31	+1.2
3,842,560	-	ade	b3665	0.32	+0.4
3,842,565	-	ade	b3665	0.33	+0.4
3,842,565	-	ade	b3665	0.33	-0.3
3,842,632	-	ade	b3665	0.37	-0.5
3,842,632	-	ade	b3665	0.37	+0.8
3,842,661	-	ade	b3665	0.38	+0.4
3,842,714	-	ade	b3665	0.41	+2.4
3,842,791	-	ade	b3665	0.46	-0.3