Strain Fitness in Escherichia coli BW25113 around b3330

Experiment: Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
3,459,001	+				-0.1
3,459,004	-				-0.7
3,459,015	-				+0.5
3,459,027	-				-0.9
3,459,078	-				-1.1
3,459,078	-				-2.3
3,459,203	-	gspG	b3328	0.36	+0.2
3,459,203	-	gspG	b3328	0.36	+1.4
3,459,226	-	gspG	b3328	0.41	-0.3
3,459,244	-	gspG	b3328	0.45	+0.0
3,459,252	+	gspG	b3328	0.47	+0.0
3,459,252	+	gspG	b3328	0.47	-1.2
3,459,288	-	gspG	b3328	0.55	-3.9
3,459,288	-	gspG	b3328	0.55	+0.3
3,459,320	+	gspG	b3328	0.63	-1.1
3,459,320	+	gspG	b3328	0.63	+0.1
3,459,324	+	gspG	b3328	0.64	-0.8
3,459,355	-	gspG	b3328	0.71	+2.0
3,459,360	+	gspG	b3328	0.72	+0.3
3,459,360	+	gspG	b3328	0.72	+1.7
3,459,360	+	gspG	b3328	0.72	-0.1
3,459,360	+	gspG	b3328	0.72	-0.4
3,459,368	-	gspG	b3328	0.74	-0.4
3,459,371	+	gspG	b3328	0.74	-2.3
3,459,389	-	gspG	b3328	0.79	-0.2
3,459,391	+	gspG	b3328	0.79	-0.6
3,459,391	+	gspG	b3328	0.79	+0.1
3,459,391	+	gspG	b3328	0.79	+0.9
3,459,399	-	gspG	b3328	0.81	-0.0
3,459,421	+	gspG	b3328	0.86	-1.9
3,459,446	-				-4.1
3,459,460	-				+1.7
3,459,460	-				-3.1
3,459,519	-				+0.7
3,459,519	-				-1.2
3,459,530	-				-1.1
3,459,530	-				+0.7
3,459,540	-				-1.6
3,459,570	+	gspH	b3329	0.16	-0.6
3,459,578	-	gspH	b3329	0.17	-0.4
3,459,603	-	gspH	b3329	0.22	-3.3
3,459,607	-	gspH	b3329	0.23	-0.3
3,459,607	-	gspH	b3329	0.23	-3.9
3,459,674	-	gspH	b3329	0.36	-4.2
3,459,698	-	gspH	b3329	0.41	-0.6
3,459,716	+	gspH	b3329	0.44	-2.1
3,459,742	+	gspH	b3329	0.49	-0.3
3,459,742	+	gspH	b3329	0.49	+2.1
3,459,747	+	gspH	b3329	0.50	+0.3
3,459,818	+	gspH	b3329	0.64	-0.1
3,459,851	-	gspH	b3329	0.71	-0.0
3,459,851	-	gspH	b3329	0.71	-0.2
3,459,893	+	gspH	b3329	0.79	-0.0
3,459,920	-	gspH	b3329	0.84	-1.1
3,459,930	+	gspH	b3329	0.86	+0.3
3,459,937	+	gspH	b3329	0.88	+1.2
3,459,937	+	gspH	b3329	0.88	+0.0
3,459,947	+	gspH	b3329	0.90	-2.9
3,459,947	+	gspH	b3329	0.90	-0.4
3,459,955	-				-1.1
3,459,964	-				-1.2
3,459,978	+				+0.5
3,459,978	+				+0.1
3,459,978	+				+0.1
3,459,995	+				-0.9
3,460,012	+				-1.2
3,460,012	+				-2.9
3,460,031	-				+0.3
3,460,043	-	yheH	b3330	0.12	-0.6
3,460,057	+	yheH	b3330	0.16	-2.7
3,460,081	+	yheH	b3330	0.22	-0.4
3,460,081	+	yheH	b3330	0.22	-2.3
3,460,081	+	yheH	b3330	0.22	+0.3
3,460,081	+	yheH	b3330	0.22	+1.7
3,460,083	+	yheH	b3330	0.23	-2.0
3,460,083	+	yheH	b3330	0.23	-1.4
3,460,086	-	yheH	b3330	0.24	-0.0
3,460,086	-	yheH	b3330	0.24	-3.0
3,460,086	-	yheH	b3330	0.24	+0.8
3,460,089	-	yheH	b3330	0.25	+0.0
3,460,089	-	yheH	b3330	0.25	-0.0
3,460,107	+	yheH	b3330	0.29	-1.4
3,460,114	+	yheH	b3330	0.31	+0.4
3,460,133	+	yheH	b3330	0.36	+0.6
3,460,198	-	yheH	b3330	0.53	+0.0
3,460,198	-	yheH	b3330	0.53	-0.4
3,460,224	+	yheH	b3330	0.60	-2.3
3,460,248	-	yheH	b3330	0.67	-0.5
3,460,248	-	yheH	b3330	0.67	+0.5
3,460,248	-	yheH	b3330	0.67	-1.0
3,460,277	-	yheH	b3330	0.74	-0.3
3,460,280	+	yheH	b3330	0.75	+0.4
3,460,280	+	yheH	b3330	0.75	+0.7
3,460,280	+	yheH	b3330	0.75	-1.0
3,460,280	+	yheH	b3330	0.75	+0.2
3,460,280	+	yheH	b3330	0.75	+1.1
3,460,385	+				+0.9
3,460,388	-				+1.1
3,460,395	+				-3.1
3,460,395	+				-1.6
3,460,401	+				-0.1
3,460,439	-	gspJ	b3331	0.12	-0.9
3,460,518	+				+0.3
3,460,524	+	gspJ	b3331	0.27	+0.2
3,460,529	-	gspJ	b3331	0.28	-0.1
3,460,534	-	gspJ	b3331	0.29	+1.1
3,460,538	-	gspJ	b3331	0.29	-0.6
3,460,569	-	gspJ	b3331	0.35	+0.1
3,460,569	-	gspJ	b3331	0.35	-1.4
3,460,580	-	gspJ	b3331	0.36	-3.3
3,460,592	-	gspJ	b3331	0.38	+0.4
3,460,596	+	gspJ	b3331	0.39	-3.3
3,460,639	-	gspJ	b3331	0.46	+0.6
3,460,666	+				-0.3
3,460,667	+	gspJ	b3331	0.51	-0.3
3,460,668	-	gspJ	b3331	0.51	-1.2
3,460,674	-	gspJ	b3331	0.52	-2.5
3,460,686	-	gspJ	b3331	0.54	+0.7
3,460,686	-	gspJ	b3331	0.54	+1.1
3,460,705	-	gspJ	b3331	0.58	+0.1
3,460,705	-	gspJ	b3331	0.58	+0.1
3,460,707	+	gspJ	b3331	0.58	+0.1
3,460,713	-	gspJ	b3331	0.59	+0.5
3,460,713	-	gspJ	b3331	0.59	-2.0
3,460,725	-	gspJ	b3331	0.61	+0.3
3,460,725	-	gspJ	b3331	0.61	-0.3
3,460,727	-	gspJ	b3331	0.61	-0.5
3,460,732	-	gspJ	b3331	0.62	+0.0
3,460,734	-	gspJ	b3331	0.63	-0.4
3,460,770	-	gspJ	b3331	0.69	+0.3
3,460,770	-	gspJ	b3331	0.69	-3.1
3,460,770	-	gspJ	b3331	0.69	-0.6
3,460,771	-	gspJ	b3331	0.69	-1.4
3,460,835	+	gspJ	b3331	0.80	-3.0
3,460,835	+	gspJ	b3331	0.80	+0.8
3,460,848	+	gspJ	b3331	0.82	-3.0
3,460,848	+	gspJ	b3331	0.82	-2.4
3,460,854	+	gspJ	b3331	0.83	+0.9
3,460,870	-	gspJ	b3331	0.86	-0.2
3,460,872	-	gspJ	b3331	0.86	+0.4
3,460,872	-	gspJ	b3331	0.86	-3.2
3,460,877	+	gspJ	b3331	0.87	-1.0
3,460,890	-	gspJ	b3331	0.89	+1.0
3,460,900	+				+0.6
3,460,900	+				-3.4
3,460,937	-				-3.1
3,460,937	-				-0.8
3,460,978	-				-2.1
3,460,978	-				+0.3
3,460,982	+				+0.1
3,460,982	+				-1.7
3,461,004	+				-0.7
3,461,021	+				+0.0
3,461,045	-	gspK	b3332	0.10	+0.6
3,461,045	-	gspK	b3332	0.10	-3.2
3,461,094	+	gspK	b3332	0.15	-1.3
3,461,129	-	gspK	b3332	0.19	-0.2
3,461,132	+	gspK	b3332	0.19	-3.8
3,461,139	-	gspK	b3332	0.20	+1.1
3,461,147	+	gspK	b3332	0.20	-0.3
3,461,176	+	gspK	b3332	0.23	-0.4
3,461,176	+	gspK	b3332	0.23	+0.7
3,461,176	+	gspK	b3332	0.23	+2.1
3,461,176	+	gspK	b3332	0.23	-3.0
3,461,178	+	gspK	b3332	0.24	+0.5
3,461,178	+	gspK	b3332	0.24	-1.3
3,461,184	-	gspK	b3332	0.24	-0.5
3,461,186	-	gspK	b3332	0.24	+0.6
3,461,186	-	gspK	b3332	0.24	+0.0
3,461,186	-	gspK	b3332	0.24	-1.4
3,461,201	+	gspK	b3332	0.26	-2.3
3,461,249	-	gspK	b3332	0.31	+0.5
3,461,253	+	gspK	b3332	0.31	+0.2
3,461,261	-	gspK	b3332	0.32	-2.4
3,461,289	+	gspK	b3332	0.35	+0.3
3,461,320	+	gspK	b3332	0.38	-0.6
3,461,323	+	gspK	b3332	0.38	+0.7
3,461,343	-	gspK	b3332	0.40	-0.1
3,461,343	-	gspK	b3332	0.40	-1.1
3,461,348	+	gspK	b3332	0.41	-0.5
3,461,348	+	gspK	b3332	0.41	-0.4
3,461,348	+	gspK	b3332	0.41	+0.4
3,461,352	-	gspK	b3332	0.41	-0.3