Strain Fitness in Escherichia coli BW25113 around b1525
Experiment: Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB |
---|---|---|---|---|---|
remove | |||||
1,610,422 | - | -0.4 | |||
1,610,543 | + | yneH | b1524 | 0.21 | -4.0 |
1,611,288 | + | -3.6 | |||
1,611,747 | - | b1525 | b1525 | 0.29 | -1.2 |
1,611,781 | - | b1525 | b1525 | 0.32 | +1.0 |
1,611,925 | - | b1525 | b1525 | 0.42 | -1.4 |
1,612,020 | + | b1525 | b1525 | 0.49 | -0.7 |
1,612,066 | - | b1525 | b1525 | 0.52 | +0.9 |
1,612,177 | - | b1525 | b1525 | 0.60 | +0.4 |
1,612,217 | + | b1525 | b1525 | 0.63 | +0.4 |
1,612,225 | - | b1525 | b1525 | 0.64 | +0.8 |
1,612,359 | + | b1525 | b1525 | 0.73 | +0.3 |
1,612,361 | + | b1525 | b1525 | 0.74 | +0.1 |
1,612,776 | - | -1.1 | |||
1,612,999 | + | yneJ | b1526 | 0.19 | +0.9 |
1,612,999 | + | yneJ | b1526 | 0.19 | -1.4 |
1,613,337 | - | yneJ | b1526 | 0.58 | -0.3 |
1,613,373 | + | yneJ | b1526 | 0.62 | +0.2 |
1,613,444 | + | yneJ | b1526 | 0.70 | -4.0 |
1,613,563 | + | yneJ | b1526 | 0.83 | -0.3 |
1,613,695 | - | -3.3 | |||
1,613,695 | - | -1.9 |
Or see this region's nucleotide sequence