Strain Fitness in Escherichia coli BW25113 around b0243
Experiment: Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Time0_Wash=PBS; Attachment_time=2hrs; Attachment_surface=PDMS; Sample_type=attached; Outgrowth=LB |
---|---|---|---|---|---|
remove | |||||
259,804 | + | proB | b0242 | 0.17 | -1.2 |
259,851 | - | proB | b0242 | 0.22 | -0.1 |
260,024 | - | proB | b0242 | 0.37 | +0.8 |
260,048 | - | proB | b0242 | 0.39 | +0.1 |
260,138 | + | proB | b0242 | 0.48 | -3.6 |
260,243 | - | proB | b0242 | 0.57 | +0.0 |
260,279 | + | proB | b0242 | 0.60 | -2.0 |
260,378 | - | proB | b0242 | 0.69 | -0.3 |
260,378 | - | proB | b0242 | 0.69 | -3.0 |
260,506 | + | proB | b0242 | 0.81 | +0.3 |
260,506 | + | proB | b0242 | 0.81 | -0.2 |
260,569 | - | proB | b0242 | 0.87 | -0.6 |
260,594 | + | proB | b0242 | 0.89 | +0.8 |
260,609 | + | +0.4 | |||
260,611 | + | -0.9 | |||
260,625 | - | -0.1 | |||
260,629 | - | +1.6 | |||
260,666 | + | -0.7 | |||
260,666 | + | +0.3 | |||
260,760 | + | -1.2 | |||
260,852 | + | -0.2 | |||
260,932 | + | proA | b0243 | 0.16 | -2.6 |
260,932 | + | proA | b0243 | 0.16 | -0.6 |
260,932 | - | proA | b0243 | 0.16 | -1.1 |
260,932 | - | proA | b0243 | 0.16 | -3.0 |
260,981 | - | proA | b0243 | 0.20 | -0.6 |
260,983 | - | proA | b0243 | 0.20 | -2.4 |
260,983 | - | proA | b0243 | 0.20 | +0.7 |
261,176 | + | proA | b0243 | 0.36 | -0.9 |
261,266 | - | -1.0 | |||
261,266 | - | proA | b0243 | 0.43 | -0.1 |
261,360 | - | proA | b0243 | 0.50 | -4.3 |
261,360 | - | proA | b0243 | 0.50 | -1.4 |
261,388 | + | proA | b0243 | 0.53 | +0.3 |
261,439 | + | proA | b0243 | 0.57 | +0.1 |
261,449 | + | proA | b0243 | 0.58 | +0.7 |
261,449 | + | proA | b0243 | 0.58 | -1.8 |
261,476 | + | proA | b0243 | 0.60 | -0.5 |
261,476 | + | proA | b0243 | 0.60 | +0.1 |
261,583 | - | proA | b0243 | 0.68 | +0.5 |
261,583 | - | proA | b0243 | 0.68 | -1.2 |
261,605 | + | proA | b0243 | 0.70 | -0.0 |
261,656 | - | proA | b0243 | 0.74 | +0.5 |
261,670 | - | proA | b0243 | 0.75 | -2.2 |
261,670 | - | proA | b0243 | 0.75 | +1.8 |
261,746 | + | proA | b0243 | 0.81 | -1.5 |
261,759 | - | proA | b0243 | 0.82 | -0.0 |
261,759 | - | proA | b0243 | 0.82 | +0.8 |
261,824 | - | proA | b0243 | 0.87 | +1.3 |
261,824 | - | proA | b0243 | 0.87 | +0.2 |
261,869 | - | -1.9 | |||
261,916 | - | +0.5 | |||
261,916 | - | -0.8 | |||
261,960 | - | -0.4 | |||
261,960 | - | -1.8 | |||
262,045 | + | -0.1 | |||
262,091 | - | +0.3 | |||
262,113 | + | thrW | b0244 | 0.24 | +0.3 |
262,270 | + | +1.5 | |||
262,310 | + | +1.5 | |||
262,310 | + | -0.6 | |||
262,319 | + | -0.8 | |||
262,371 | + | -0.3 | |||
262,479 | - | -1.9 | |||
262,546 | - | +0.0 | |||
262,548 | + | +0.6 | |||
262,565 | + | -0.1 | |||
262,644 | - | ykfI | b0245 | 0.27 | +0.5 |
262,717 | - | ykfI | b0245 | 0.48 | +0.7 |
262,719 | + | ykfI | b0245 | 0.49 | -1.3 |
262,727 | - | ykfI | b0245 | 0.51 | +1.7 |
262,727 | - | ykfI | b0245 | 0.51 | +0.4 |
262,727 | - | ykfI | b0245 | 0.51 | +0.6 |
262,730 | + | ykfI | b0245 | 0.52 | -0.4 |
262,730 | + | ykfI | b0245 | 0.52 | +1.8 |
262,738 | - | ykfI | b0245 | 0.54 | -0.1 |
262,760 | + | ykfI | b0245 | 0.61 | -0.9 |
262,786 | - | ykfI | b0245 | 0.68 | +0.2 |
262,909 | - | +0.1 | |||
262,909 | - | +0.4 | |||
262,917 | + | -1.5 | |||
262,917 | + | +0.6 | |||
262,917 | + | +0.7 | |||
262,935 | - | -1.4 | |||
262,943 | + | +1.1 | |||
262,943 | + | -0.1 | |||
262,980 | + | yafW | b0246 | 0.21 | -1.2 |
262,980 | + | yafW | b0246 | 0.21 | -3.2 |
Or see this region's nucleotide sequence