Experiment: D-Glucose (C) pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5041 and PP_5042 are separated by 166 nucleotides PP_5042 and PP_5043 are separated by 98 nucleotides
PP_5041: PP_5041 - glycogen phosphorylase, at 5,743,414 to 5,745,864
_5041
PP_5042: PP_5042 - conserved protein of unknown function, at 5,746,031 to 5,746,453
_5042
PP_5043: PP_5043 - putative PhoPQ-activated pathogenicity-related protein, at 5,746,552 to 5,747,973
_5043
Position (kb) 5746
5747 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5745.209 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.244 kb on + strand, within PP_5041 at 5745.245 kb on - strand, within PP_5041 at 5745.245 kb on - strand, within PP_5041 at 5745.245 kb on - strand, within PP_5041 at 5745.309 kb on - strand, within PP_5041 at 5745.456 kb on + strand, within PP_5041 at 5745.457 kb on - strand, within PP_5041 at 5745.457 kb on - strand, within PP_5041 at 5745.614 kb on + strand, within PP_5041 at 5745.653 kb on + strand at 5745.654 kb on - strand at 5745.791 kb on + strand at 5745.791 kb on + strand at 5745.791 kb on + strand at 5745.791 kb on + strand at 5745.792 kb on - strand at 5745.792 kb on - strand at 5745.792 kb on - strand at 5745.792 kb on - strand at 5745.808 kb on + strand at 5745.809 kb on - strand at 5745.809 kb on - strand at 5745.850 kb on - strand at 5745.913 kb on + strand at 5745.913 kb on + strand at 5745.913 kb on + strand at 5745.914 kb on - strand at 5745.939 kb on + strand at 5745.941 kb on - strand at 5746.043 kb on - strand at 5746.043 kb on - strand at 5746.044 kb on + strand at 5746.044 kb on + strand at 5746.045 kb on - strand at 5746.045 kb on - strand at 5746.045 kb on - strand at 5746.045 kb on - strand at 5746.106 kb on + strand, within PP_5042 at 5746.328 kb on + strand, within PP_5042 at 5746.329 kb on - strand, within PP_5042 at 5746.329 kb on - strand, within PP_5042 at 5746.329 kb on - strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.361 kb on + strand, within PP_5042 at 5746.418 kb on + strand at 5746.471 kb on - strand at 5746.672 kb on + strand at 5746.754 kb on + strand, within PP_5043 at 5746.754 kb on + strand, within PP_5043 at 5746.755 kb on - strand, within PP_5043 at 5746.755 kb on - strand, within PP_5043 at 5746.810 kb on + strand, within PP_5043 at 5746.810 kb on + strand, within PP_5043 at 5746.810 kb on + strand, within PP_5043 at 5746.811 kb on - strand, within PP_5043 at 5746.822 kb on + strand, within PP_5043 at 5746.823 kb on - strand, within PP_5043 at 5746.911 kb on + strand, within PP_5043 at 5747.018 kb on + strand, within PP_5043 at 5747.018 kb on + strand, within PP_5043 at 5747.019 kb on - strand, within PP_5043 at 5747.019 kb on - strand, within PP_5043 at 5747.112 kb on - strand, within PP_5043 at 5747.173 kb on + strand, within PP_5043 at 5747.173 kb on + strand, within PP_5043 at 5747.173 kb on + strand, within PP_5043 at 5747.174 kb on - strand, within PP_5043 at 5747.174 kb on - strand, within PP_5043
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) pH 6.5 remove 5,745,209 + PP_5041 0.73 +0.9 5,745,244 + PP_5041 0.75 -0.2 5,745,244 + PP_5041 0.75 +1.1 5,745,244 + PP_5041 0.75 +0.6 5,745,244 + PP_5041 0.75 +0.5 5,745,244 + PP_5041 0.75 -1.6 5,745,245 - PP_5041 0.75 -0.1 5,745,245 - PP_5041 0.75 +0.5 5,745,245 - PP_5041 0.75 +0.5 5,745,309 - PP_5041 0.77 -0.5 5,745,456 + PP_5041 0.83 -0.1 5,745,457 - PP_5041 0.83 +0.7 5,745,457 - PP_5041 0.83 -1.4 5,745,614 + PP_5041 0.90 -0.2 5,745,653 + +1.8 5,745,654 - +0.2 5,745,791 + +0.0 5,745,791 + +0.7 5,745,791 + +0.6 5,745,791 + -0.2 5,745,792 - +0.7 5,745,792 - -0.7 5,745,792 - +0.0 5,745,792 - -1.0 5,745,808 + +1.9 5,745,809 - +0.2 5,745,809 - +1.0 5,745,850 - +0.3 5,745,913 + +0.2 5,745,913 + -0.8 5,745,913 + +0.2 5,745,914 - +0.5 5,745,939 + +0.5 5,745,941 - +1.3 5,746,043 - +0.3 5,746,043 - -0.6 5,746,044 + -0.1 5,746,044 + +0.4 5,746,045 - +1.4 5,746,045 - -0.2 5,746,045 - +1.3 5,746,045 - +0.0 5,746,106 + PP_5042 0.18 +2.9 5,746,328 + PP_5042 0.70 +2.2 5,746,329 - PP_5042 0.70 +3.0 5,746,329 - PP_5042 0.70 +0.1 5,746,329 - PP_5042 0.70 +1.7 5,746,361 + PP_5042 0.78 +0.1 5,746,361 + PP_5042 0.78 +0.9 5,746,361 + PP_5042 0.78 -0.8 5,746,361 + PP_5042 0.78 -0.2 5,746,418 + +0.9 5,746,471 - +0.5 5,746,672 + -0.8 5,746,754 + PP_5043 0.14 -0.1 5,746,754 + PP_5043 0.14 +0.2 5,746,755 - PP_5043 0.14 +1.1 5,746,755 - PP_5043 0.14 -0.3 5,746,810 + PP_5043 0.18 +1.1 5,746,810 + PP_5043 0.18 -0.1 5,746,810 + PP_5043 0.18 +0.0 5,746,811 - PP_5043 0.18 -1.0 5,746,822 + PP_5043 0.19 -0.7 5,746,823 - PP_5043 0.19 -0.5 5,746,911 + PP_5043 0.25 -0.8 5,747,018 + PP_5043 0.33 -0.1 5,747,018 + PP_5043 0.33 -1.6 5,747,019 - PP_5043 0.33 +0.5 5,747,019 - PP_5043 0.33 -0.6 5,747,112 - PP_5043 0.39 -0.2 5,747,173 + PP_5043 0.44 +0.1 5,747,173 + PP_5043 0.44 -0.3 5,747,173 + PP_5043 0.44 +1.3 5,747,174 - PP_5043 0.44 +0.4 5,747,174 - PP_5043 0.44 -2.5
Or see this region's nucleotide sequence