Experiment: D-Glucose (C) pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0532 and PP_0533 are separated by 100 nucleotides PP_0533 and PP_0534 overlap by 1 nucleotides PP_0534 and PP_0535 are separated by 181 nucleotides
PP_0532: PP_0532 - conserved exported protein of unknown function, at 617,675 to 618,568
_0532
PP_0533: PP_0533 - histidine kinase, at 618,669 to 619,997
_0533
PP_0534: PP_0534 - putative Transcriptional regulator PfeR, at 619,997 to 620,689
_0534
PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048
_0535
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 617.977 kb on - strand, within PP_0532 at 618.033 kb on + strand, within PP_0532 at 618.033 kb on + strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.034 kb on - strand, within PP_0532 at 618.199 kb on - strand, within PP_0532 at 618.447 kb on + strand, within PP_0532 at 618.447 kb on + strand, within PP_0532 at 618.623 kb on - strand at 618.634 kb on - strand at 618.634 kb on - strand at 618.642 kb on + strand at 618.642 kb on + strand at 618.643 kb on - strand at 618.652 kb on + strand at 618.653 kb on - strand at 618.812 kb on - strand, within PP_0533 at 619.182 kb on + strand, within PP_0533 at 619.473 kb on + strand, within PP_0533 at 619.474 kb on - strand, within PP_0533 at 619.485 kb on + strand, within PP_0533 at 619.486 kb on - strand, within PP_0533 at 619.627 kb on + strand, within PP_0533 at 619.627 kb on + strand, within PP_0533 at 619.746 kb on + strand, within PP_0533 at 619.747 kb on - strand, within PP_0533 at 619.747 kb on - strand, within PP_0533 at 619.849 kb on + strand, within PP_0533 at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.888 kb on + strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.889 kb on - strand at 619.893 kb on - strand at 619.893 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.026 kb on - strand at 620.131 kb on + strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.132 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.134 kb on - strand, within PP_0534 at 620.158 kb on - strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.230 kb on + strand, within PP_0534 at 620.231 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.395 kb on - strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.564 kb on + strand, within PP_0534 at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.768 kb on - strand at 620.776 kb on + strand at 620.777 kb on - strand at 620.777 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) pH 6.5 remove 617,977 - PP_0532 0.34 +0.5 618,033 + PP_0532 0.40 +0.1 618,033 + PP_0532 0.40 -0.8 618,034 - PP_0532 0.40 +0.5 618,034 - PP_0532 0.40 +0.1 618,034 - PP_0532 0.40 -2.1 618,034 - PP_0532 0.40 +1.3 618,034 - PP_0532 0.40 -0.6 618,199 - PP_0532 0.59 -0.1 618,447 + PP_0532 0.86 +0.4 618,447 + PP_0532 0.86 -1.2 618,623 - +1.0 618,634 - -0.3 618,634 - +0.8 618,642 + +0.5 618,642 + -1.6 618,643 - +1.2 618,652 + -2.0 618,653 - -0.0 618,812 - PP_0533 0.11 +3.0 619,182 + PP_0533 0.39 +2.1 619,473 + PP_0533 0.60 +0.6 619,474 - PP_0533 0.61 -1.0 619,485 + PP_0533 0.61 +0.4 619,486 - PP_0533 0.61 +0.1 619,627 + PP_0533 0.72 -0.1 619,627 + PP_0533 0.72 -0.1 619,746 + PP_0533 0.81 +0.4 619,747 - PP_0533 0.81 -0.8 619,747 - PP_0533 0.81 -0.1 619,849 + PP_0533 0.89 +1.6 619,888 + -0.3 619,888 + -0.6 619,888 + +0.5 619,888 + +0.6 619,889 - +0.8 619,889 - -0.4 619,889 - -0.4 619,893 - +0.8 619,893 - -2.0 620,026 - +0.3 620,026 - -1.1 620,026 - +0.4 620,026 - +0.7 620,131 + PP_0534 0.19 -0.7 620,132 - PP_0534 0.19 -0.5 620,132 - PP_0534 0.19 +0.3 620,134 - PP_0534 0.20 +1.3 620,134 - PP_0534 0.20 +0.5 620,134 - PP_0534 0.20 -0.7 620,158 - PP_0534 0.23 +0.8 620,230 + PP_0534 0.34 -0.7 620,230 + PP_0534 0.34 +0.1 620,231 - PP_0534 0.34 +0.2 620,395 - PP_0534 0.57 -0.4 620,395 - PP_0534 0.57 +0.1 620,564 + PP_0534 0.82 -0.4 620,564 + PP_0534 0.82 -0.7 620,768 - -0.8 620,768 - -0.4 620,768 - +0.1 620,768 - -0.2 620,776 + -2.3 620,777 - +0.2 620,777 - +1.2
Or see this region's nucleotide sequence