Strain Fitness in Pseudomonas putida KT2440 around PP_5348

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
6,095,898	+		PP_5347	0.44	-4.2
6,096,010	+		PP_5347	0.51	-1.0
6,096,011	-		PP_5347	0.51	-1.9
6,096,038	+		PP_5347	0.53	-2.5
6,096,038	+		PP_5347	0.53	-0.3
6,096,038	+		PP_5347	0.53	-0.7
6,096,039	-		PP_5347	0.53	-2.3
6,096,039	-		PP_5347	0.53	-1.0
6,096,184	+		PP_5347	0.64	-1.5
6,096,199	+		PP_5347	0.65	+0.4
6,096,199	+		PP_5347	0.65	+0.4
6,096,199	+		PP_5347	0.65	-2.3
6,096,199	+		PP_5347	0.65	-5.6
6,096,280	+		PP_5347	0.70	-0.6
6,096,280	+		PP_5347	0.70	-1.4
6,096,292	+		PP_5347	0.71	-1.8
6,096,292	+		PP_5347	0.71	-4.4
6,096,292	+		PP_5347	0.71	+2.4
6,096,292	+		PP_5347	0.71	-0.6
6,096,292	+		PP_5347	0.71	-5.9
6,096,293	-		PP_5347	0.71	-2.6
6,096,717	+				-1.7
6,096,718	-				-0.9
6,096,908	-				-4.3
6,097,003	+		PP_5348	0.12	-1.4
6,097,004	-		PP_5348	0.12	-0.6
6,097,009	-		PP_5348	0.13	-1.9
6,097,056	-		PP_5348	0.18	-1.3
6,097,056	-		PP_5348	0.18	-5.4
6,097,073	+		PP_5348	0.19	-3.2
6,097,074	-		PP_5348	0.19	-0.7
6,097,117	+		PP_5348	0.24	-0.7
6,097,118	-		PP_5348	0.24	-3.6
6,097,118	-		PP_5348	0.24	-2.1
6,097,214	+		PP_5348	0.34	-3.2
6,097,214	+		PP_5348	0.34	-4.5
6,097,471	+		PP_5348	0.61	-3.6
6,097,472	-		PP_5348	0.61	-3.3
6,097,472	-		PP_5348	0.61	-3.7
6,097,523	+		PP_5348	0.66	-2.0
6,097,524	-		PP_5348	0.66	-3.3
6,097,524	-		PP_5348	0.66	-6.1
6,097,567	-		PP_5348	0.71	-1.1
6,097,690	-		PP_5348	0.83	-2.9
6,097,702	+		PP_5348	0.85	-3.1
6,097,702	+		PP_5348	0.85	-5.5
6,097,703	-		PP_5348	0.85	-3.3
6,097,703	-		PP_5348	0.85	-5.4
6,097,703	-		PP_5348	0.85	-2.0
6,097,906	+		PP_5730	0.53	+0.3
6,097,906	+		PP_5730	0.53	-1.3
6,097,906	+		PP_5730	0.53	+0.1
6,097,906	+		PP_5730	0.53	+0.9
6,097,906	+		PP_5730	0.53	-0.3
6,097,985	-		PP_5730	0.89	+0.6
6,097,985	-		PP_5730	0.89	+1.1
6,097,985	-		PP_5730	0.89	+0.3
6,097,985	-		PP_5730	0.89	-1.1
6,097,988	+				-0.9
6,097,988	+				-0.3
6,097,989	-				-1.8
6,097,989	-				-0.8
6,098,026	-				-1.7
6,098,026	-				+0.0
6,098,026	-				-0.3
6,098,026	-				-0.0
6,098,026	-				+0.1
6,098,027	+				-0.6
6,098,028	+				+0.2
6,098,060	+				+0.1
6,098,061	-				+0.6
6,098,110	-				+1.0
6,098,159	+				-0.2
6,098,160	-				-0.1
6,098,161	+				-2.4
6,098,174	+				-0.8
6,098,175	-				-0.1
6,098,175	-				+0.9
6,098,175	-				+0.0
6,098,309	-		PP_5350	0.10	+2.4
6,098,388	+		PP_5350	0.19	-1.8
6,098,389	-		PP_5350	0.19	-1.7
6,098,389	-		PP_5350	0.19	+0.9
6,098,389	-		PP_5350	0.19	+0.7
6,098,435	+		PP_5350	0.25	-2.4
6,098,436	-		PP_5350	0.25	-1.0
6,098,545	+		PP_5350	0.37	-1.0
6,098,611	-		PP_5350	0.45	-2.5
6,098,611	-		PP_5350	0.45	-2.0
6,098,611	-		PP_5350	0.45	+0.1
6,098,689	-				+0.3
6,098,689	-		PP_5350	0.54	-1.7
6,098,808	+		PP_5350	0.68	-2.8