Strain Fitness in Pseudomonas putida KT2440 around PP_4781

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
5,441,811	+		PP_4780	0.53	-0.1
5,441,812	-		PP_4780	0.53	+0.2
5,441,812	-		PP_4780	0.53	-0.5
5,441,946	+		PP_4780	0.61	+0.7
5,441,947	-		PP_4780	0.61	+1.2
5,441,947	-		PP_4780	0.61	-0.6
5,441,947	-		PP_4780	0.61	-0.2
5,441,947	-		PP_4780	0.61	-0.9
5,441,980	-		PP_4780	0.63	-0.9
5,442,088	-		PP_4780	0.70	+0.3
5,442,117	+		PP_4780	0.72	-0.1
5,442,118	-		PP_4780	0.72	+0.9
5,442,213	+		PP_4780	0.78	+0.0
5,442,213	+		PP_4780	0.78	-0.8
5,442,214	-		PP_4780	0.78	+1.3
5,442,266	+		PP_4780	0.81	+0.2
5,442,266	+		PP_4780	0.81	-0.5
5,442,267	-		PP_4780	0.81	-3.1
5,442,313	-		PP_4780	0.84	+0.4
5,442,435	+				+0.8
5,442,435	+				+0.6
5,442,435	+				+0.6
5,442,436	-				-1.1
5,442,436	-				+1.3
5,442,436	-				-1.9
5,442,436	-				+0.4
5,442,643	-				+0.1
5,442,657	+				-2.6
5,442,657	+				+0.3
5,442,658	-				+0.6
5,442,658	-				+0.5
5,442,664	+				+0.5
5,442,665	-				+0.3
5,442,704	+				+0.7
5,442,714	+				-0.2
5,442,715	-				-0.7
5,442,715	-				-0.7
5,443,042	+		PP_4781	0.13	+1.2
5,443,060	+		PP_4781	0.14	-0.0
5,443,236	+		PP_4781	0.22	-0.5
5,443,266	+		PP_4781	0.24	-0.4
5,443,354	+		PP_4781	0.28	-0.1
5,443,354	+		PP_4781	0.28	+0.4
5,443,355	-		PP_4781	0.28	-1.3
5,443,355	-		PP_4781	0.28	+0.6
5,443,372	+		PP_4781	0.29	+0.6
5,443,372	+		PP_4781	0.29	-0.7
5,443,373	-		PP_4781	0.29	-1.4
5,443,413	+		PP_4781	0.31	+0.5
5,443,413	+		PP_4781	0.31	+0.6
5,443,414	-		PP_4781	0.31	-0.2
5,443,570	+		PP_4781	0.39	+1.1
5,443,570	+		PP_4781	0.39	+1.0
5,443,683	+		PP_4781	0.45	+0.0
5,443,683	+		PP_4781	0.45	+2.3
5,443,683	+		PP_4781	0.45	-0.3
5,443,683	+		PP_4781	0.45	-0.8
5,443,683	+		PP_4781	0.45	-0.4
5,443,683	+		PP_4781	0.45	-0.0
5,443,683	+		PP_4781	0.45	+0.5
5,443,684	-		PP_4781	0.45	+1.5
5,443,684	-		PP_4781	0.45	+1.3
5,443,684	-		PP_4781	0.45	-0.2
5,443,684	-		PP_4781	0.45	-0.9
5,443,684	-		PP_4781	0.45	+0.9
5,443,711	-		PP_4781	0.46	-1.1
5,443,719	-		PP_4781	0.47	-0.7
5,443,719	-		PP_4781	0.47	-0.2
5,443,809	+		PP_4781	0.51	+0.8
5,443,809	+		PP_4781	0.51	-0.3
5,443,810	-		PP_4781	0.51	-2.1
5,443,832	+		PP_4781	0.52	-0.3
5,443,882	-		PP_4781	0.55	-1.0
5,443,902	-		PP_4781	0.56	+0.5
5,444,073	+		PP_4781	0.64	+1.5
5,444,074	-		PP_4781	0.65	-2.7
5,444,074	-		PP_4781	0.65	-0.7
5,444,106	+		PP_4781	0.66	-0.5
5,444,106	+		PP_4781	0.66	-0.0
5,444,106	+		PP_4781	0.66	+0.8
5,444,127	+		PP_4781	0.67	+0.1
5,444,127	+		PP_4781	0.67	-2.3
5,444,128	-		PP_4781	0.67	+0.5
5,444,128	-		PP_4781	0.67	-1.5
5,444,128	-		PP_4781	0.67	-2.5
5,444,128	-		PP_4781	0.67	-0.1
5,444,136	+		PP_4781	0.68	-0.6
5,444,136	+		PP_4781	0.68	-0.4
5,444,136	+		PP_4781	0.68	+0.1
5,444,136	+		PP_4781	0.68	+1.3
5,444,136	+		PP_4781	0.68	+0.0
5,444,137	-		PP_4781	0.68	+0.7
5,444,137	-		PP_4781	0.68	-1.7
5,444,137	-		PP_4781	0.68	+0.2
5,444,137	-		PP_4781	0.68	-0.9
5,444,137	-		PP_4781	0.68	+0.2
5,444,137	-		PP_4781	0.68	+0.7
5,444,137	-		PP_4781	0.68	-2.3
5,444,137	-		PP_4781	0.68	+0.1
5,444,139	+				+1.3
5,444,139	+		PP_4781	0.68	-1.2
5,444,139	+		PP_4781	0.68	+0.5
5,444,140	-		PP_4781	0.68	+0.4
5,444,140	-		PP_4781	0.68	+0.7
5,444,140	-		PP_4781	0.68	-1.5
5,444,140	-		PP_4781	0.68	-1.2
5,444,145	+		PP_4781	0.68	+1.3
5,444,145	+		PP_4781	0.68	+0.1
5,444,169	+		PP_4781	0.69	+0.6
5,444,169	+		PP_4781	0.69	+0.4
5,444,170	-		PP_4781	0.69	-1.1
5,444,170	-		PP_4781	0.69	-0.5
5,444,170	-		PP_4781	0.69	+0.1
5,444,185	-		PP_4781	0.70	+0.7
5,444,185	-		PP_4781	0.70	+0.7
5,444,202	-		PP_4781	0.71	+1.6
5,444,211	+		PP_4781	0.71	-0.9
5,444,212	-		PP_4781	0.71	-0.5
5,444,229	+		PP_4781	0.72	-1.1
5,444,229	+		PP_4781	0.72	+0.6
5,444,230	-		PP_4781	0.72	-1.1
5,444,230	-		PP_4781	0.72	+0.0
5,444,320	-		PP_4781	0.77	+0.6
5,444,320	-		PP_4781	0.77	-1.4
5,444,364	+		PP_4781	0.79	-1.2
5,444,364	+		PP_4781	0.79	+0.9
5,444,364	+		PP_4781	0.79	+0.2
5,444,364	+		PP_4781	0.79	-1.1
5,444,365	-		PP_4781	0.79	+0.0
5,444,365	-		PP_4781	0.79	-1.8
5,444,365	-		PP_4781	0.79	-1.4
5,444,431	-		PP_4781	0.82	+0.3
5,444,454	+		PP_4781	0.84	+0.5
5,444,455	-		PP_4781	0.84	-0.7
5,444,671	-				+0.2
5,444,671	-				-1.2
5,444,772	+				-0.2
5,444,773	-				+0.7
5,444,773	-				+0.2
5,444,779	+				-1.7
5,444,779	+				-0.2
5,444,780	-				+0.8
5,444,780	-				-0.8
5,444,881	+				+0.7
5,444,882	-				-2.0
5,444,882	-				+0.0
5,444,882	-				-1.2
5,444,882	-				+0.3
5,444,969	-				+0.6
5,445,031	+				-1.4
5,445,032	-				+0.3
5,445,050	+				-0.9
5,445,050	+				-3.3
5,445,050	+				-0.4
5,445,051	-				+1.3
5,445,051	-				-2.4
5,445,051	-				+0.7
5,445,051	-				+1.3
5,445,054	+				-0.2
5,445,054	+				+1.3
5,445,055	-				-1.3
5,445,125	+		PP_4782	0.10	-5.9
5,445,126	-		PP_4782	0.10	+2.3
5,445,424	-		PP_4782	0.47	+0.3
5,445,610	-		PP_4782	0.71	-4.4
5,445,663	+		PP_4782	0.77	-0.3
5,445,663	+		PP_4782	0.77	-0.1
5,445,663	+		PP_4782	0.77	-3.9
5,445,664	-		PP_4782	0.78	+1.3
5,445,756	+		PP_4782	0.89	-4.8
5,445,756	+		PP_4782	0.89	-1.7