Strain Fitness in Pseudomonas putida KT2440 around PP_4108

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
4,642,265	+		PP_4107	0.23	+1.1
4,642,305	+		PP_4107	0.28	+0.5
4,642,305	+		PP_4107	0.28	-0.6
4,642,305	+		PP_4107	0.28	-1.0
4,642,306	-		PP_4107	0.28	+0.1
4,642,316	+		PP_4107	0.29	-1.1
4,642,316	+		PP_4107	0.29	+0.1
4,642,316	+		PP_4107	0.29	+1.0
4,642,317	-		PP_4107	0.29	-0.0
4,642,317	-		PP_4107	0.29	+0.0
4,642,328	+		PP_4107	0.30	-1.7
4,642,329	-		PP_4107	0.30	+0.2
4,642,707	-		PP_4107	0.72	+1.2
4,642,707	-		PP_4107	0.72	+1.0
4,642,707	-		PP_4107	0.72	+0.1
4,642,707	-		PP_4107	0.72	-0.4
4,642,733	+		PP_4107	0.75	+0.5
4,642,734	-		PP_4107	0.75	-0.4
4,642,734	-		PP_4107	0.75	+0.4
4,642,734	-		PP_4107	0.75	+0.4
4,642,741	+		PP_4107	0.76	+0.7
4,642,742	-		PP_4107	0.76	-0.2
4,642,788	-		PP_4107	0.81	-1.0
4,643,031	-				+1.0
4,643,064	+				-1.4
4,643,069	-				-0.2
4,643,101	+				+0.8
4,643,104	+				+0.5
4,643,199	+				-1.4
4,643,199	+				-0.4
4,643,233	+				-1.1
4,643,233	+				+1.0
4,643,332	+		PP_4108	0.16	-0.6
4,643,332	+				-0.1
4,643,333	-		PP_4108	0.16	-0.4
4,643,569	+		PP_4108	0.35	+1.1
4,643,570	-		PP_4108	0.35	+0.5
4,643,606	-		PP_4108	0.38	+0.7
4,643,641	-		PP_4108	0.41	-3.1
4,643,999	-		PP_4108	0.69	+0.3
4,644,109	+		PP_4108	0.78	+0.4
4,644,110	-		PP_4108	0.78	+0.9
4,644,142	+		PP_4108	0.81	+1.1
4,644,142	+		PP_4108	0.81	-1.5
4,644,143	-		PP_4108	0.81	+0.9
4,644,389	+				+0.1
4,644,390	-				+0.3
4,644,482	+		PP_4109	0.31	+0.4
4,644,483	-		PP_4109	0.31	-0.7
4,644,483	-		PP_4109	0.31	-0.4
4,644,671	+				+0.5
4,644,671	+				+0.5
4,644,672	-				+0.2
4,644,672	-				+0.7
4,644,678	-				-0.2
4,644,678	-				+0.9
4,644,712	+				+0.6
4,644,712	+				-1.4
4,644,712	+				-0.1
4,644,712	+				-1.3
4,644,712	+				+1.1
4,644,712	+				+0.6
4,644,712	+				-0.9
4,644,713	-				+0.1
4,644,713	-				-1.7
4,644,713	-				-0.4
4,644,713	-				+0.6
4,644,714	+				+0.2
4,644,714	+				+0.4
4,644,715	-				+2.3
4,644,715	-				-0.4
4,644,730	+				+0.8
4,644,731	-				+0.2
4,644,731	-				+0.9
4,644,731	-				+0.3
4,644,895	-				+1.5
4,645,070	+		PP_5658	0.39	+1.2
4,645,071	-		PP_5658	0.40	-0.6
4,645,071	-		PP_5658	0.40	-0.7
4,645,093	+		PP_5658	0.44	-0.0