Strain Fitness in Pseudomonas putida KT2440 around PP_3549

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
4,023,523	+		PP_3548	0.36	-1.6
4,023,523	+		PP_3548	0.36	+0.5
4,023,599	+		PP_3548	0.41	-0.1
4,023,599	+		PP_3548	0.41	+0.5
4,023,601	+		PP_3548	0.41	-3.1
4,023,601	+		PP_3548	0.41	-0.1
4,023,601	+		PP_3548	0.41	+1.4
4,023,850	-				+0.7
4,023,850	-		PP_3548	0.57	+0.0
4,023,895	+		PP_3548	0.60	+0.8
4,023,895	+		PP_3548	0.60	+1.1
4,023,895	+		PP_3548	0.60	-1.3
4,023,895	+		PP_3548	0.60	+0.1
4,023,895	+				+0.2
4,023,895	+		PP_3548	0.60	-0.3
4,023,896	-		PP_3548	0.60	-0.1
4,023,896	-		PP_3548	0.60	-0.2
4,023,896	-		PP_3548	0.60	+0.2
4,023,896	-		PP_3548	0.60	-1.6
4,023,896	-		PP_3548	0.60	-0.1
4,024,009	+		PP_3548	0.67	-0.6
4,024,009	+		PP_3548	0.67	-1.3
4,024,009	+		PP_3548	0.67	+0.1
4,024,009	+		PP_3548	0.67	-0.4
4,024,010	-		PP_3548	0.68	-0.3
4,024,010	-		PP_3548	0.68	+0.7
4,024,010	-		PP_3548	0.68	+0.9
4,024,010	-		PP_3548	0.68	+0.0
4,024,013	+		PP_3548	0.68	-0.3
4,024,014	-		PP_3548	0.68	+0.1
4,024,145	-		PP_3548	0.76	-1.1
4,024,360	+				+0.6
4,024,360	+				+0.4
4,024,360	+				-1.4
4,024,361	-				-0.2
4,024,361	-				-0.1
4,024,361	-				-2.1
4,024,590	+				+0.8
4,024,590	+				+1.1
4,024,590	+				-0.8
4,024,591	-				+0.7
4,024,605	+				+0.1
4,024,606	-				-0.4
4,024,606	-				+0.8
4,024,846	-		PP_3549	0.29	-0.7
4,024,863	+		PP_3549	0.30	+1.7
4,024,864	-		PP_3549	0.30	-0.3
4,025,012	-		PP_3549	0.42	-0.5
4,025,012	-		PP_3549	0.42	+1.9
4,025,026	-		PP_3549	0.44	+0.1
4,025,435	+		PP_3549	0.78	+0.2
4,025,435	+		PP_3549	0.78	+1.8
4,025,435	+		PP_3549	0.78	+0.1
4,025,483	-		PP_3549	0.82	+0.1
4,025,532	+		PP_3549	0.86	-1.6
4,025,533	-		PP_3549	0.86	-0.4
4,025,574	+		PP_3549	0.90	-0.5
4,025,704	+				-0.2
4,025,705	-				+0.9
4,025,705	-				-0.2
4,025,705	-				+0.9
4,025,714	-				-0.4
4,025,722	-				-0.8
4,026,049	-		PP_3550	0.68	-0.2
4,026,242	+				+0.7
4,026,243	-				-0.3
4,026,250	+				+0.5
4,026,250	+				+1.1
4,026,250	+				-0.8
4,026,277	-				+0.3
4,026,373	-				+0.1
4,026,562	-		PP_3551	0.29	-2.0
4,026,698	-		PP_3551	0.50	-1.8