Strain Fitness in Pseudomonas putida KT2440 around PP_3368

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
3,810,701	-				-0.5
3,810,701	-				+0.4
3,810,701	-				-1.0
3,810,751	+				-0.6
3,810,851	-		PP_3367	0.15	-0.2
3,810,852	+		PP_3367	0.15	-1.4
3,810,853	-		PP_3367	0.16	+0.4
3,810,968	-		PP_3367	0.33	-0.2
3,810,970	+		PP_3367	0.33	+0.5
3,810,970	+		PP_3367	0.33	+1.6
3,810,970	+		PP_3367	0.33	-1.0
3,810,985	-		PP_3367	0.36	+1.6
3,810,985	-		PP_3367	0.36	-0.7
3,811,063	+		PP_3367	0.47	-1.5
3,811,213	-		PP_3367	0.70	-1.3
3,811,265	+		PP_3367	0.78	-1.7
3,811,400	+				+0.3
3,811,401	-				+1.9
3,811,447	-				+0.2
3,811,543	+				-0.5
3,811,543	+				-0.3
3,811,631	+				+0.1
3,811,631	+				-1.9
3,811,631	+				+0.6
3,811,632	-				+0.4
3,811,632	-				+2.1
3,811,632	-				-1.9
3,811,632	-				+0.1
3,811,632	-				+1.5
3,811,632	-				+0.2
3,811,632	-				+0.1
3,811,666	+				-1.9
3,811,667	-				+0.5
3,811,672	+				+0.2
3,811,673	-				-0.3
3,811,950	+		PP_3368	0.23	+0.4
3,811,951	-		PP_3368	0.23	-0.4
3,811,951	-		PP_3368	0.23	+0.6
3,812,176	-				+1.6
3,812,312	-		PP_3368	0.54	+0.9
3,812,320	+		PP_3368	0.54	+0.1
3,812,320	+		PP_3368	0.54	+0.6
3,812,320	+		PP_3368	0.54	+0.1
3,812,320	+		PP_3368	0.54	+0.6
3,812,321	-		PP_3368	0.54	-0.3
3,812,321	-		PP_3368	0.54	+1.2
3,812,321	-		PP_3368	0.54	-0.8
3,812,321	-		PP_3368	0.54	+2.6
3,812,380	-		PP_3368	0.59	+0.6
3,812,380	-		PP_3368	0.59	+1.5
3,812,380	-		PP_3368	0.59	+0.4
3,812,380	-		PP_3368	0.59	-0.1
3,812,527	+		PP_3368	0.72	-0.5
3,812,528	-		PP_3368	0.72	+0.1
3,812,528	-		PP_3368	0.72	-1.2
3,812,561	+		PP_3368	0.75	+1.0
3,812,562	-		PP_3368	0.75	+0.9
3,812,787	+				+0.9
3,812,826	+				-1.8
3,812,827	-				+0.0
3,812,876	+				-0.5
3,812,876	+				+0.0
3,812,877	-				-0.4
3,812,884	+				+0.6
3,812,889	+				+0.9
3,812,897	+				+1.3
3,812,897	+				-0.7
3,812,898	-				+0.7
3,812,898	-				-1.0
3,813,089	+		PP_3369	0.19	+0.2
3,813,090	-		PP_3369	0.19	-0.1
3,813,300	+		PP_3369	0.44	-1.3
3,813,300	+		PP_3369	0.44	-2.0
3,813,301	-		PP_3369	0.44	-0.9
3,813,419	+		PP_3369	0.58	-0.3
3,813,419	+		PP_3369	0.58	+0.5
3,813,420	-		PP_3369	0.58	+1.3
3,813,461	+		PP_3369	0.63	-0.3
3,813,461	+		PP_3369	0.63	-0.1
3,813,765	+				-0.7
3,813,837	+				-2.5
3,813,838	-				+1.2