Strain Fitness in Pseudomonas putida KT2440 around PP_3316

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
3,750,100	+		PP_3314	0.47	-2.8
3,750,162	-		PP_3314	0.61	+0.2
3,750,162	-		PP_3314	0.61	-1.4
3,750,162	-		PP_3314	0.61	+1.4
3,750,321	+				+0.1
3,750,321	+				-0.1
3,750,322	-				+0.3
3,750,322	-				-1.0
3,750,322	-				-1.0
3,750,335	+				-0.2
3,750,335	+				+1.1
3,750,336	-				-0.9
3,750,421	-				+0.7
3,750,421	-				+1.0
3,750,471	+				-0.0
3,750,472	-				+2.0
3,750,472	-				-0.6
3,750,530	+				+1.6
3,750,531	-				-1.1
3,750,841	+		PP_3315	0.66	-0.4
3,750,841	+		PP_3315	0.66	-0.3
3,750,856	+		PP_3315	0.69	-1.3
3,750,856	+		PP_3315	0.69	-1.2
3,750,929	+		PP_3315	0.85	+0.8
3,751,259	+				-1.3
3,751,525	-		PP_3316	0.16	-0.5
3,751,525	-		PP_3316	0.16	-0.6
3,751,525	-		PP_3316	0.16	-0.4
3,751,557	+		PP_3316	0.18	+0.4
3,751,637	+		PP_3316	0.20	-0.7
3,751,637	+		PP_3316	0.20	-2.6
3,751,638	-		PP_3316	0.20	-1.9
3,751,684	-		PP_3316	0.22	-0.2
3,751,684	-		PP_3316	0.22	+1.0
3,751,730	+		PP_3316	0.24	+0.6
3,751,739	+		PP_3316	0.24	-0.6
3,751,788	-		PP_3316	0.26	-0.1
3,751,804	-		PP_3316	0.26	+0.7
3,751,804	-				+0.1
3,752,210	+		PP_3316	0.41	-0.7
3,752,210	+		PP_3316	0.41	+1.0
3,752,211	-		PP_3316	0.41	-0.8
3,752,211	-		PP_3316	0.41	-1.6
3,752,231	+		PP_3316	0.41	-0.4
3,752,232	-		PP_3316	0.42	-1.3
3,752,232	-		PP_3316	0.42	+1.4
3,752,549	+		PP_3316	0.53	+0.5
3,752,941	+		PP_3316	0.67	-0.7
3,753,029	+		PP_3316	0.70	-2.1
3,753,029	+		PP_3316	0.70	+0.4
3,753,029	+		PP_3316	0.70	-1.0
3,753,130	-		PP_3316	0.73	-1.6
3,753,208	+		PP_3316	0.76	-1.0
3,753,208	+		PP_3316	0.76	-0.6
3,753,208	+		PP_3316	0.76	-2.0
3,753,208	+		PP_3316	0.76	+0.7
3,753,208	+		PP_3316	0.76	-0.3
3,753,212	+		PP_3316	0.76	-0.6
3,753,212	+		PP_3316	0.76	-0.6
3,753,212	+		PP_3316	0.76	-0.9
3,753,212	+		PP_3316	0.76	-0.0
3,753,213	-		PP_3316	0.76	+1.8
3,753,213	-		PP_3316	0.76	-2.7
3,753,213	-		PP_3316	0.76	+0.2
3,753,213	-		PP_3316	0.76	-0.2
3,753,213	-		PP_3316	0.76	-0.9
3,753,213	-		PP_3316	0.76	-0.4
3,753,410	-		PP_3316	0.83	-1.2
3,753,918	+				-0.1
3,754,186	+		PP_3318	0.57	+0.3
3,754,186	+		PP_3318	0.57	-0.8
3,754,298	+				-0.9
3,754,333	+				+0.6
3,754,408	+				-0.2
3,754,409	-				+2.6
3,754,409	-				-0.6
3,754,418	+				-0.2
3,754,459	+				+0.1
3,754,460	-				+0.2
3,754,460	-				+0.7
3,754,581	+				+1.3
3,754,582	-				+0.4
3,754,619	-				+1.0
3,754,625	+				-0.0
3,754,779	+				-1.4
3,754,780	-				+0.4
3,754,823	+		PP_3319	0.12	+1.2
3,754,823	+		PP_3319	0.12	-0.4
3,754,824	-		PP_3319	0.12	-0.3
3,754,824	-		PP_3319	0.12	+0.6
3,754,824	-		PP_3319	0.12	+1.2
3,754,871	+		PP_3319	0.14	-1.2
3,754,872	-		PP_3319	0.14	-0.4
3,754,872	-		PP_3319	0.14	+0.4