Strain Fitness in Pseudomonas putida KT2440 around PP_1018

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
1,160,068	+		PP_1016	0.86	-1.3
1,160,068	+		PP_1016	0.86	-0.7
1,160,068	+		PP_1016	0.86	-1.7
1,160,069	-		PP_1016	0.86	-0.3
1,160,069	-		PP_1016	0.86	-1.9
1,160,069	-		PP_1016	0.86	-0.8
1,160,158	+				+0.3
1,160,158	+				-1.2
1,160,158	+				-0.8
1,160,158	+				-2.5
1,160,194	+				-0.1
1,160,194	+				-2.2
1,160,194	+				-0.6
1,160,194	+				-1.9
1,160,194	+				-0.9
1,160,195	-				-0.3
1,160,195	-				-1.0
1,160,195	-				-1.2
1,160,195	-				-0.1
1,160,270	+				-2.7
1,160,270	+				-2.3
1,160,270	+				-0.9
1,160,370	+		PP_1017	0.21	-2.2
1,160,371	-		PP_1017	0.22	-1.3
1,160,371	-		PP_1017	0.22	-1.1
1,160,406	-				-0.8
1,160,477	+		PP_1017	0.34	+0.3
1,160,478	-		PP_1017	0.34	-0.3
1,160,478	-		PP_1017	0.34	-2.7
1,160,608	+		PP_1017	0.50	-1.2
1,160,642	+		PP_1017	0.54	-0.6
1,160,643	-		PP_1017	0.54	-0.7
1,160,682	-		PP_1017	0.58	-0.9
1,160,682	-		PP_1017	0.58	-1.3
1,160,878	-		PP_1017	0.81	-1.4
1,160,899	+		PP_1017	0.84	-1.3
1,160,922	-		PP_1017	0.87	-0.6
1,160,922	-		PP_1017	0.87	-0.6
1,160,922	-		PP_1017	0.87	-2.0
1,160,975	+				-1.1
1,160,976	-				-0.2
1,160,976	-				-0.7
1,160,994	-				-1.0
1,161,033	-				-0.4
1,161,074	+				-1.3
1,161,075	-				-1.5
1,161,188	-		PP_1018	0.13	-0.9
1,161,303	-		PP_1018	0.23	-1.0
1,161,303	-		PP_1018	0.23	-1.0
1,161,506	+		PP_1018	0.41	-1.6
1,161,506	+		PP_1018	0.41	+2.5
1,161,609	-		PP_1018	0.49	-1.7
1,161,609	-		PP_1018	0.49	+0.2
1,161,707	+		PP_1018	0.58	-2.3
1,161,707	+		PP_1018	0.58	-1.6
1,161,707	+		PP_1018	0.58	-2.4
1,161,707	+		PP_1018	0.58	-1.4
1,161,708	-		PP_1018	0.58	-0.9
1,161,708	-		PP_1018	0.58	+0.1
1,161,708	-		PP_1018	0.58	-0.4
1,161,708	-		PP_1018	0.58	-1.2
1,162,199	+				-0.6
1,162,199	+				+0.3
1,162,200	-				-0.9
1,162,200	-				-0.0
1,162,210	+				-0.6
1,162,211	-				+1.2
1,162,211	-				-2.0
1,162,288	+				+0.0
1,162,288	+				-0.3
1,162,288	+				+0.3
1,162,288	+				+0.4
1,162,289	-				+1.6
1,162,389	+		PP_1019	0.12	-1.2
1,162,407	+		PP_1019	0.13	-0.3
1,162,407	+		PP_1019	0.13	-0.3
1,162,407	+		PP_1019	0.13	+1.3
1,162,408	-		PP_1019	0.13	+0.2
1,162,443	+		PP_1019	0.16	-2.3
1,162,467	+				+2.0
1,162,467	+		PP_1019	0.17	-0.3
1,162,468	-		PP_1019	0.17	+0.3
1,162,513	+		PP_1019	0.21	+0.0
1,162,514	-		PP_1019	0.21	-0.6
1,162,684	-		PP_1019	0.34	+0.4
1,162,854	+		PP_1019	0.46	+0.1
1,162,854	+		PP_1019	0.46	-0.4
1,162,855	-		PP_1019	0.46	-0.4
1,162,855	-		PP_1019	0.46	+0.7
1,162,855	-		PP_1019	0.46	+0.1
1,162,855	-		PP_1019	0.46	-0.8
1,162,880	-		PP_1019	0.48	-2.0
1,162,880	-		PP_1019	0.48	-0.3
1,162,952	+		PP_1019	0.53	+0.0
1,162,952	+		PP_1019	0.53	-1.8
1,163,034	+		PP_1019	0.60	+1.1
1,163,034	+		PP_1019	0.60	-1.7
1,163,034	+		PP_1019	0.60	-1.6
1,163,034	+		PP_1019	0.60	-0.7
1,163,035	-		PP_1019	0.60	-0.1
1,163,035	-		PP_1019	0.60	-2.3
1,163,035	-		PP_1019	0.60	-0.3
1,163,037	+				-1.3
1,163,037	+		PP_1019	0.60	-0.8
1,163,037	+		PP_1019	0.60	-0.5
1,163,037	+		PP_1019	0.60	-0.2
1,163,038	-		PP_1019	0.60	+0.0
1,163,064	+		PP_1019	0.62	-0.3
1,163,065	-		PP_1019	0.62	+0.3