Strain Fitness in Pseudomonas putida KT2440 around PP_0868

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
1,006,724	+		PP_0867	0.68	-1.0
1,006,725	-		PP_0867	0.68	+0.6
1,006,750	-		PP_0867	0.69	-1.0
1,006,760	+		PP_0867	0.70	+0.3
1,006,761	-		PP_0867	0.70	-0.3
1,006,787	+		PP_0867	0.71	+1.1
1,006,787	+		PP_0867	0.71	-0.2
1,006,787	+		PP_0867	0.71	+0.1
1,006,788	-		PP_0867	0.71	+0.4
1,006,788	-		PP_0867	0.71	-0.6
1,006,788	-		PP_0867	0.71	+0.1
1,006,822	+		PP_0867	0.72	-0.5
1,006,916	+		PP_0867	0.76	+0.2
1,006,943	+		PP_0867	0.77	+0.3
1,006,944	-		PP_0867	0.77	-2.5
1,006,944	-		PP_0867	0.77	+0.2
1,007,015	+		PP_0867	0.80	-0.3
1,007,069	+		PP_0867	0.82	+0.5
1,007,069	+		PP_0867	0.82	-1.4
1,007,070	-		PP_0867	0.82	+0.3
1,007,075	+		PP_0867	0.82	+0.5
1,007,075	+		PP_0867	0.82	+0.5
1,007,076	-		PP_0867	0.83	-0.2
1,007,076	-		PP_0867	0.83	-0.2
1,007,076	-		PP_0867	0.83	+0.0
1,007,077	+		PP_0867	0.83	-0.6
1,007,078	-		PP_0867	0.83	+1.0
1,007,090	+		PP_0867	0.83	+0.2
1,007,090	+		PP_0867	0.83	+0.3
1,007,090	+		PP_0867	0.83	+0.8
1,007,090	+		PP_0867	0.83	+1.0
1,007,090	+		PP_0867	0.83	-0.2
1,007,090	+		PP_0867	0.83	+1.0
1,007,091	-		PP_0867	0.83	+0.2
1,007,091	-		PP_0867	0.83	-0.5
1,007,136	-		PP_0867	0.85	-0.3
1,007,136	-		PP_0867	0.85	-0.6
1,007,136	-		PP_0867	0.85	+0.2
1,007,176	+		PP_0867	0.87	-1.6
1,007,177	-		PP_0867	0.87	+2.5
1,007,204	+		PP_0867	0.88	-1.5
1,007,204	+		PP_0867	0.88	-1.3
1,007,204	+		PP_0867	0.88	-0.9
1,007,205	-		PP_0867	0.88	+0.1
1,007,271	-				+2.1
1,007,271	-				-0.1
1,007,414	+				-0.2
1,007,414	+				-1.5
1,007,414	+				-0.8
1,007,415	-				-0.2
1,007,450	+				+1.4
1,007,450	+				-2.0
1,007,450	+				+1.4
1,007,451	-				+0.7
1,007,451	-				+0.2
1,007,451	-				+0.1
1,007,474	+				+1.0
1,007,475	-				-1.5
1,007,546	-				-0.4
1,007,546	-				-0.4
1,007,558	-				-1.2
1,007,592	-				+0.8
1,007,592	-				-0.2
1,007,622	+				-0.1
1,007,661	-				+2.1
1,007,745	-		PP_0868	0.13	+1.1
1,007,745	-		PP_0868	0.13	-0.7
1,007,745	-		PP_0868	0.13	+3.4
1,007,858	+		PP_0868	0.23	+0.8
1,007,858	+		PP_0868	0.23	+1.0
1,008,170	-		PP_0868	0.50	+0.2
1,008,353	+		PP_0868	0.66	+1.9
1,008,447	+		PP_0868	0.74	-0.1
1,008,448	-		PP_0868	0.74	-0.3
1,008,448	-		PP_0868	0.74	+1.8
1,008,448	-		PP_0868	0.74	+2.7
1,008,500	+		PP_0868	0.79	+0.1
1,008,501	-		PP_0868	0.79	-0.3
1,008,522	+		PP_0868	0.80	-1.1
1,008,828	+		PP_0869	0.13	+1.4
1,008,829	-		PP_0869	0.13	+1.1
1,008,875	+		PP_0869	0.20	-0.7
1,008,876	-		PP_0869	0.20	+0.5
1,008,876	-		PP_0869	0.20	+0.1
1,009,081	+		PP_0869	0.52	+0.5
1,009,111	+		PP_0869	0.56	-0.3
1,009,111	+		PP_0869	0.56	-0.3
1,009,403	+				+0.2
1,009,404	-				-0.5
1,009,404	-				-1.0
1,009,605	+		PP_0870	0.22	-0.4