Strain Fitness in Pseudomonas putida KT2440 around PP_0207

Experiment: D-Glucose (C) pH 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0205 and PP_0206 are separated by 62 nucleotidesPP_0206 and PP_0207 are separated by 119 nucleotidesPP_0207 and PP_0208 are separated by 15 nucleotidesPP_0208 and PP_0209 overlap by 1 nucleotides PP_0205: PP_0205 - putative Oxidoreductase, at 256,315 to 258,039 _0205 PP_0206: PP_0206 - Ferredoxin, 4Fe-4S, at 258,102 to 258,347 _0206 PP_0207: PP_0207 - putative Nitrate ABC transporter, periplasmic nitrate-binding protein, at 258,467 to 259,873 _0207 PP_0208: PP_0208 - putative Nitrate ABC transporter, permease protein, at 259,889 to 260,671 _0208 PP_0209: PP_0209 - ATP-binding taurine transporter subunit, at 260,671 to 261,522 _0209 Position (kb) 258 259 260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 257.478 kb on + strand, within PP_0205at 257.479 kb on - strand, within PP_0205at 257.479 kb on - strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.482 kb on + strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.483 kb on - strand, within PP_0205at 257.515 kb on + strand, within PP_0205at 257.515 kb on + strand, within PP_0205at 257.516 kb on - strand, within PP_0205at 257.516 kb on - strand, within PP_0205at 257.629 kb on + strand, within PP_0205at 257.630 kb on - strand, within PP_0205at 257.630 kb on - strand, within PP_0205at 257.656 kb on + strand, within PP_0205at 257.854 kb on + strand, within PP_0205at 258.240 kb on - strand, within PP_0206at 258.252 kb on + strand, within PP_0206at 258.252 kb on + strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.253 kb on - strand, within PP_0206at 258.442 kb on + strandat 258.443 kb on - strandat 258.444 kb on + strandat 258.537 kb on + strandat 258.537 kb on + strandat 258.538 kb on - strandat 258.538 kb on - strandat 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.624 kb on - strand, within PP_0207at 258.644 kb on + strand, within PP_0207at 258.644 kb on + strand, within PP_0207at 258.659 kb on + strand, within PP_0207at 258.659 kb on + strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.660 kb on - strand, within PP_0207at 258.908 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.080 kb on + strand, within PP_0207at 259.113 kb on - strand, within PP_0207at 259.113 kb on - strand, within PP_0207at 259.113 kb on - strandat 259.181 kb on + strand, within PP_0207at 259.181 kb on + strand, within PP_0207at 259.182 kb on - strand, within PP_0207at 259.203 kb on - strand, within PP_0207at 259.256 kb on + strand, within PP_0207at 259.257 kb on - strand, within PP_0207at 259.305 kb on - strand, within PP_0207at 259.305 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.379 kb on - strand, within PP_0207at 259.390 kb on + strand, within PP_0207at 259.390 kb on + strand, within PP_0207at 259.455 kb on - strand, within PP_0207at 259.455 kb on - strand, within PP_0207at 259.511 kb on + strand, within PP_0207at 259.511 kb on + strand, within PP_0207at 259.512 kb on - strand, within PP_0207at 259.519 kb on - strand, within PP_0207at 259.691 kb on + strand, within PP_0207at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.003 kb on + strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.004 kb on - strand, within PP_0208at 260.011 kb on + strand, within PP_0208at 260.012 kb on - strand, within PP_0208at 260.012 kb on - strand, within PP_0208at 260.097 kb on + strand, within PP_0208at 260.098 kb on - strand, within PP_0208at 260.098 kb on - strand, within PP_0208at 260.108 kb on + strand, within PP_0208at 260.109 kb on - strand, within PP_0208at 260.176 kb on + strand, within PP_0208at 260.177 kb on - strand, within PP_0208at 260.409 kb on + strand, within PP_0208at 260.409 kb on + strand, within PP_0208at 260.410 kb on - strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.461 kb on + strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.462 kb on - strand, within PP_0208at 260.520 kb on - strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.522 kb on + strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.523 kb on - strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.537 kb on + strand, within PP_0208at 260.538 kb on - strand, within PP_0208at 260.649 kb on - strandat 260.680 kb on + strandat 260.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C) pH 6
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257,478 + PP_0205 0.67 -0.4
257,479 - PP_0205 0.67 +0.2
257,479 - PP_0205 0.67 +0.4
257,482 + PP_0205 0.68 +1.3
257,482 + PP_0205 0.68 -2.0
257,482 + PP_0205 0.68 +0.9
257,482 + PP_0205 0.68 -0.2
257,483 - PP_0205 0.68 +0.1
257,483 - PP_0205 0.68 +2.4
257,483 - PP_0205 0.68 -0.9
257,483 - PP_0205 0.68 -0.0
257,515 + PP_0205 0.70 -1.5
257,515 + PP_0205 0.70 +1.4
257,516 - PP_0205 0.70 +0.2
257,516 - PP_0205 0.70 -2.2
257,629 + PP_0205 0.76 -0.1
257,630 - PP_0205 0.76 -1.5
257,630 - PP_0205 0.76 +0.4
257,656 + PP_0205 0.78 -1.2
257,854 + PP_0205 0.89 -0.1
258,240 - PP_0206 0.56 +0.2
258,252 + PP_0206 0.61 +0.0
258,252 + PP_0206 0.61 -0.2
258,253 - PP_0206 0.61 -1.9
258,253 - PP_0206 0.61 +1.1
258,253 - PP_0206 0.61 +1.6
258,442 + -0.6
258,443 - -0.7
258,444 + -1.3
258,537 + +2.4
258,537 + +1.0
258,538 - +0.1
258,538 - -1.1
258,624 - PP_0207 0.11 -1.6
258,624 - PP_0207 0.11 +0.0
258,624 - PP_0207 0.11 +0.7
258,624 - PP_0207 0.11 -0.6
258,624 - PP_0207 0.11 -0.2
258,644 + PP_0207 0.13 -1.4
258,644 + PP_0207 0.13 -1.4
258,659 + PP_0207 0.14 +0.6
258,659 + PP_0207 0.14 +0.4
258,660 - PP_0207 0.14 +0.7
258,660 - PP_0207 0.14 -1.2
258,660 - PP_0207 0.14 -1.0
258,908 + PP_0207 0.31 +0.3
259,080 + PP_0207 0.44 -0.3
259,080 + PP_0207 0.44 -2.6
259,080 + PP_0207 0.44 -1.1
259,080 + PP_0207 0.44 -0.1
259,113 - PP_0207 0.46 -0.2
259,113 - PP_0207 0.46 -0.4
259,113 - +0.8
259,181 + PP_0207 0.51 +0.1
259,181 + PP_0207 0.51 -0.8
259,182 - PP_0207 0.51 +0.1
259,203 - PP_0207 0.52 -0.0
259,256 + PP_0207 0.56 -0.5
259,257 - PP_0207 0.56 +0.5
259,305 - PP_0207 0.60 -0.1
259,305 - PP_0207 0.60 -0.6
259,379 - PP_0207 0.65 -1.4
259,379 - PP_0207 0.65 +0.4
259,379 - PP_0207 0.65 -0.5
259,379 - PP_0207 0.65 -0.3
259,379 - PP_0207 0.65 -0.3
259,390 + PP_0207 0.66 +0.2
259,390 + PP_0207 0.66 +1.4
259,455 - PP_0207 0.70 -1.6
259,455 - PP_0207 0.70 -1.7
259,511 + PP_0207 0.74 -1.9
259,511 + PP_0207 0.74 -0.0
259,512 - PP_0207 0.74 -3.0
259,519 - PP_0207 0.75 -0.5
259,691 + PP_0207 0.87 -0.1
260,003 + PP_0208 0.15 -0.5
260,003 + PP_0208 0.15 -0.3
260,003 + PP_0208 0.15 +1.0
260,003 + PP_0208 0.15 +0.7
260,003 + PP_0208 0.15 -1.3
260,003 + PP_0208 0.15 +0.8
260,003 + PP_0208 0.15 +2.4
260,003 + PP_0208 0.15 +0.6
260,003 + PP_0208 0.15 +0.9
260,003 + PP_0208 0.15 +0.0
260,003 + PP_0208 0.15 +1.2
260,004 - PP_0208 0.15 +1.0
260,004 - PP_0208 0.15 -0.4
260,004 - PP_0208 0.15 -0.1
260,004 - PP_0208 0.15 -1.3
260,004 - PP_0208 0.15 +1.0
260,004 - PP_0208 0.15 +0.7
260,004 - PP_0208 0.15 +0.5
260,011 + PP_0208 0.16 -0.2
260,012 - PP_0208 0.16 -2.0
260,012 - PP_0208 0.16 -1.3
260,097 + PP_0208 0.27 +1.3
260,098 - PP_0208 0.27 +1.1
260,098 - PP_0208 0.27 -1.0
260,108 + PP_0208 0.28 +0.5
260,109 - PP_0208 0.28 -1.1
260,176 + PP_0208 0.37 +1.4
260,177 - PP_0208 0.37 -0.5
260,409 + PP_0208 0.66 -0.5
260,409 + PP_0208 0.66 +0.0
260,410 - PP_0208 0.67 +0.4
260,461 + PP_0208 0.73 -2.8
260,461 + PP_0208 0.73 -0.3
260,461 + PP_0208 0.73 -3.1
260,462 - PP_0208 0.73 +0.4
260,462 - PP_0208 0.73 +1.2
260,462 - PP_0208 0.73 -1.3
260,520 - PP_0208 0.81 -1.0
260,522 + PP_0208 0.81 -0.5
260,522 + PP_0208 0.81 +0.9
260,522 + PP_0208 0.81 -1.2
260,523 - PP_0208 0.81 +0.3
260,523 - PP_0208 0.81 -0.2
260,523 - PP_0208 0.81 +0.7
260,537 + PP_0208 0.83 -1.8
260,537 + PP_0208 0.83 -2.5
260,537 + PP_0208 0.83 +1.4
260,538 - PP_0208 0.83 +0.5
260,649 - -1.3
260,680 + +1.1
260,700 + -0.1

Or see this region's nucleotide sequence