Strain Fitness in Pseudomonas putida KT2440 around PP_4339

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
4,929,260	+		PP_4338	0.59	-1.0
4,929,260	+		PP_4338	0.59	-0.0
4,929,261	-		PP_4338	0.59	+0.8
4,929,261	-		PP_4338	0.59	-0.2
4,930,019	+				+0.5
4,930,019	+				+0.5
4,930,019	+				+0.1
4,930,019	+				-1.8
4,930,019	+				-0.0
4,930,020	-				+0.2
4,930,020	-				+0.3
4,930,020	-				+0.1
4,930,020	-				+2.1
4,930,112	+				+1.0
4,930,113	-				-1.9
4,930,128	-				+1.1
4,930,185	+				+0.3
4,930,186	-				+0.5
4,930,249	+				+1.6
4,930,334	+		PP_4339	0.19	+0.4
4,930,335	-		PP_4339	0.19	-0.8
4,930,450	-		PP_4339	0.34	-2.9
4,930,450	-		PP_4339	0.34	+0.6
4,930,701	+		PP_4339	0.66	+0.6
4,930,701	+		PP_4339	0.66	+0.7
4,930,701	+		PP_4339	0.66	-1.1
4,930,701	+		PP_4339	0.66	-1.5
4,930,701	+		PP_4339	0.66	-1.6
4,930,701	+		PP_4339	0.66	-2.6
4,930,702	-		PP_4339	0.66	+0.4
4,930,702	-		PP_4339	0.66	-0.2
4,930,702	-		PP_4339	0.66	-1.7
4,930,702	-		PP_4339	0.66	+0.5
4,930,702	-		PP_4339	0.66	-0.1
4,930,726	+		PP_4339	0.69	-1.1
4,930,726	+		PP_4339	0.69	-1.7
4,931,068	+		PP_4340	0.19	+0.4
4,931,068	+		PP_4340	0.19	+0.6
4,931,068	+		PP_4340	0.19	+0.7
4,931,233	+		PP_4340	0.63	-0.0
4,931,234	-		PP_4340	0.64	-1.2
4,931,383	+				-1.2
4,931,383	+				+0.7
4,931,384	-				+0.2
4,931,416	+				+0.2
4,931,444	-				-0.0
4,931,444	-				+1.0
4,931,605	-		PP_4341	0.17	-0.1
4,931,605	-		PP_4341	0.17	-1.0
4,931,607	+		PP_4341	0.18	-2.2
4,931,608	-		PP_4341	0.18	+0.5
4,931,812	-		PP_4341	0.45	-0.8
4,931,812	-		PP_4341	0.45	-0.5
4,931,814	+		PP_4341	0.45	-0.7
4,931,814	+		PP_4341	0.45	-1.0
4,931,814	+		PP_4341	0.45	-1.1
4,931,814	+		PP_4341	0.45	-1.8
4,931,815	-		PP_4341	0.46	-1.1
4,931,911	+		PP_4341	0.59	-0.6
4,931,928	-		PP_4341	0.61	-0.1