Strain Fitness in Pseudomonas putida KT2440 around PP_3382

Experiment: D-Glucose (C) pH 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C) pH 6
3,828,350	+				-0.9
3,828,350	+				-1.6
3,828,351	-				+0.4
3,828,351	-				-0.9
3,828,351	-				-0.4
3,828,351	-				+1.0
3,828,585	+		PP_3382	0.20	-0.5
3,828,586	-		PP_3382	0.20	-0.1
3,828,586	-		PP_3382	0.20	-2.0
3,828,630	+		PP_3382	0.24	+0.2
3,828,630	+		PP_3382	0.24	+0.1
3,828,631	-		PP_3382	0.24	+2.6
3,828,693	+		PP_3382	0.29	+0.1
3,828,693	+		PP_3382	0.29	-2.5
3,828,694	-		PP_3382	0.29	-1.2
3,828,694	-		PP_3382	0.29	+0.4
3,828,701	+		PP_3382	0.29	-0.6
3,828,701	+		PP_3382	0.29	-0.0
3,828,701	+		PP_3382	0.29	-0.4
3,828,702	-		PP_3382	0.29	-1.4
3,828,702	-		PP_3382	0.29	-0.1
3,828,702	-		PP_3382	0.29	+0.0
3,828,702	-		PP_3382	0.29	-0.0
3,828,702	-		PP_3382	0.29	-3.0
3,828,742	-		PP_3382	0.32	-0.1
3,829,050	+		PP_3382	0.57	-1.7
3,829,050	+		PP_3382	0.57	+0.2
3,829,051	-		PP_3382	0.57	-0.6
3,829,051	-		PP_3382	0.57	-1.2
3,829,224	+		PP_3382	0.71	+1.6
3,829,291	+		PP_3382	0.76	-3.0
3,829,292	-		PP_3382	0.76	-0.6
3,829,292	-		PP_3382	0.76	+0.7
3,829,319	+		PP_3382	0.78	-2.9
3,829,347	+		PP_3382	0.81	-1.6
3,829,348	-		PP_3382	0.81	+0.6
3,829,348	-		PP_3382	0.81	-0.8
3,829,389	+		PP_3382	0.84	-0.6
3,829,390	-		PP_3382	0.84	-1.0
3,829,488	+				-2.1
3,829,489	-				-0.8
3,829,503	-				-2.6
3,829,523	+				-0.4
3,829,523	+				-1.4
3,829,629	+				-0.6
3,829,629	+				-0.3
3,829,659	+				-1.3
3,829,692	+				-2.0
3,829,693	-				+0.5
3,829,693	-				+0.1
3,829,693	-				-0.5
3,829,693	-				-0.3
3,829,742	+				-0.6
3,829,742	+				-2.1
3,829,742	+				-2.1
3,829,743	-				+0.2
3,829,743	-				+0.1
3,829,992	+		PP_3383	0.22	-0.2
3,829,992	+		PP_3383	0.22	-0.1
3,829,992	+		PP_3383	0.22	+1.3
3,830,025	+		PP_3383	0.24	-1.0
3,830,025	+		PP_3383	0.24	+0.9
3,830,025	+		PP_3383	0.24	+2.6
3,830,025	+		PP_3383	0.24	+0.3
3,830,026	-		PP_3383	0.24	+0.1
3,830,038	-		PP_3383	0.25	-0.8
3,830,082	+		PP_3383	0.27	-0.7
3,830,082	+		PP_3383	0.27	+0.8
3,830,083	-		PP_3383	0.27	-1.3
3,830,085	+		PP_3383	0.27	+0.4
3,830,147	-		PP_3383	0.31	-0.3
3,830,290	-		PP_3383	0.39	+1.4
3,830,290	-		PP_3383	0.39	-0.2
3,830,320	+		PP_3383	0.41	+0.8
3,830,320	+		PP_3383	0.41	-0.4
3,830,321	-		PP_3383	0.41	-1.2
3,830,321	-		PP_3383	0.41	+0.2
3,830,321	-		PP_3383	0.41	-0.9
3,830,335	-		PP_3383	0.41	+0.1
3,830,344	+		PP_3383	0.42	-0.3
3,830,491	-		PP_3383	0.50	-0.8